cluster # 6572

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6572 cluster # 6572 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6572#0 length = 719 sequences # 2

consensus_6572#1 length = 464 sequences # 2

consensusID : consensus_6572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 719
fasta sequence

                              [CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG]

[+] EMBL CD067862             [CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG]
[+] EMBL CD067839             [              TGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTANATCGATTATTCAAGATCATAT                              ]




>consensus_6572#0
CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAAT
CCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACT
GGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAAT
CCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGAT
GAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGT
GGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTA
CCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATA
AGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGA
ATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTG
GATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAAT
CCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGT
TTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG

consensusID : consensus_6572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 464
fasta sequence

                              [AATCACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAAGAAGATCATTTATTGGATGAATCACCACAAATATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCAGAGTTTGAAACCAGAGGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATAAGTCCTATGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATACGTGCTGTTGCTAAATTGGCATCAACGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTATAACTAATCCACATTATACACCAATTCGACTAGGATTAATT]

[-] EMBL AI977244             [AATCACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAAGAAGATCATTTATTGGATGAATCACCACAAATATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCAGAGTTTGAAACCAGAGGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATAAGTCCTATGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATACGTGCTGTTGCTAAATTGGCATCAACGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTATAACTAATCCACATTATACACCAATTCGACTAGGATTAATT]
[+] EMBL CD201516             [   CACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAACAAGATCATTTATTGAATGAATCACCACAAACATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCA                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_6572#1
AATCACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAAGAAGATCATTTATTGG
ATGAATCACCACAAATATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTA
CAGTTCAGAGTTTGAAACCAGAGGATATACTTCCAGTTGATGCAACAGATGATAAAGTGA
TAATTGACATAAGTCCTATGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATG
CTAAAACGGATGAGATACGTGCTGTTGCTAAATTGGCATCAACGGATTCACCATTAGATG
ATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAGTGGTTTAC
CAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCA
TTATAACTAATCCACATTATACACCAATTCGACTAGGATTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6572#0      CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAAT 60
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      CCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACT 120
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      GGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAAT 180
consensus_6572#1      -----------------------AATCACC--TAAGAAAGGTCGTTGCCTTGTAAC-AAT 34
                                             * ***    ***  ***** **  * ** **** ***

consensus_6572#0      CCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGAT 240
consensus_6572#1      ATGGCCTAAAGA---AGATCATTTATTGGATGAATCACCACAAATAT------ATTCATC 85
                            ** * *   * * **** *    * ** * *   * * * *      * *    

consensus_6572#0      GAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGT 300
consensus_6572#1      GGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCA---GAGTTTGAAACCAGA 142
                      * ** ** *  * *  *  *   *      **  *      *   **  * **   *** 

consensus_6572#0      GGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTA 360
consensus_6572#1      GGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATA----AGTCCTA 198
                      *** * *  ** ***  **  ** ****   **   *** ***  * **      *  **

consensus_6572#0      CCAGCTGATGAAAGTGATAAACCAATTTGGTC-TAAACATCCTGTACCTGTATATGATAT 419
consensus_6572#1      TGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATAC 258
                             *   **   * ***  * ***     ****        *   * **  **** 

consensus_6572#0      AAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGG 479
consensus_6572#1      GTGCTGTTGCTAAATTGG------CATCAACGGATTCACCATTA--GATGATACAAC--- 307
                        ** ** * * ***          **  * *** *   ** *   *   ** ** *   

consensus_6572#0      AATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGT 539
consensus_6572#1      -AAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAG--TGGTTTACCAGC 364
                       * * *   *    ***    *** * *** **     ** ****   **  ***  ** 

consensus_6572#0      GGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAA 599
consensus_6572#1      ACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTAT 424
                        **         *   ** *  ***    *** *    * *     *** **  **** 

consensus_6572#0      TCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGG 659
consensus_6572#1      AACTAATCCAC------ATTATACACCAATTCGACTAGGAT-TAATT------------- 464
                        *** ** *       * ***     ***** *   ***  * **              

consensus_6572#0      TTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG 719
consensus_6572#1      ------------------------------------------------------------