cluster # 6580

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6580 cluster # 6580 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6580#0 length = 910 sequences # 3

consensus_6580#1 length = 229 sequences # 1

consensusID : consensus_6580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 910
fasta sequence

                              [TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTAGAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCATGATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAACCGGATATTGTTTGGCCAATCAAAAGTTT-ACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTG-AATCCTGTTGATAGATCACCATTGAAAGCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTTTCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTGTCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATCGGTTGTACTCGAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCATTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAATATAAGGAAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTTATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAATGTTAGTTTTC]

[-] EMBL CD187435             [TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTAGAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCATGATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAACCGGATATTGTTTGGCCAATCAAAAGTTTCACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTG AATCCTGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD166286             [                                                                                                                                                                                        TATTATTTGGCCAATCAAAAGTTT ACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTGAAATCCTGTTGATAGATCACCATTGAAAGCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTTTCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTGTCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATC                                                                                                                                                                                                                                                                    ]
[-] EMBL AI976811             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCATCTTCATTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAGCAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACACCATTCTCATCGGTTGTACTCGAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCATTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAATATAAGGAAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTTATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAATGTTAGTTTTC]




>consensus_6580#0
TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTA
GAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCAT
GATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAAC
CGGATATTGTTTGGCCAATCAAAAGTTTACATTAGTCCCATTAAGTAATTCTGACGAGGA
ACCAGGACGATTAATATATTTGTCAAACATTTGAATCCTGTTGATAGATCACCATTGAAA
GCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTT
TCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTG
TCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGAC
AATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGA
TGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAA
GGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATCGGTTGTACTC
GAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCA
TTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAATATAAGGA
AAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTTA
TATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAAT
GTTAGTTTTC

consensusID : consensus_6580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [GAGAAGTTGAGAATCGTAAACAGCCCAAATAATACAATCACCATCAACTGAACCAGTTATACAGAGTTGTAAATTCTTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTGAAGAGTTGGTTTACATAATGAAGAATTATTCGATAAAGGCAAATCCCATAGTCGAATATCACAGCCAATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA]

[+] EMBL CD068240             [GAGAAGTTGAGAATCGTAAACAGCCCAAATAATACAATCACCATCAACTGAACCAGTTATACAGAGTTGTAAATTCTTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTGAAGAGTTGGTTTACATAATGAAGAATTATTCGATAAAGGCAAATCCCATAGTCGAATATCACAGCCAATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA]




>consensus_6580#1
GAGAAGTTGAGAATCGTAAACAGCCCAAATAATACAATCACCATCAACTGAACCAGTTAT
ACAGAGTTGTAAATTCTTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGT
TGAAGAGTTGGTTTACATAATGAAGAATTATTCGATAAAGGCAAATCCCATAGTCGAATA
TCACAGCCAATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6580#0      TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTA 60
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      GAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCAT 120
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      GATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAAC 180
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      CGGATATTGTTTGGCCAATCAAAAGTTTACATTAGTCCCATTAAGTAATTCTGACGAGGA 240
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      ACCAGGACGATTAATATATTTGTCAAACATTTGAATCCTGTTGATAGATCACCATTGAAA 300
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      GCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTT 360
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      TCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTG 420
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      TCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGAC 480
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      AATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGA 540
consensus_6580#1      -----------------------------------------------------GAGAAGT 7
                                                                                * 

consensus_6580#0      TGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAA 600
consensus_6580#1      TGAGAATCGTAAACAGCCCAAATAATACAATCACCATCA--ACTGAACCAGTTATACAGA 65
                      ****  **     ** * **  ** *     ***  ***    *  *    *****   *

consensus_6580#0      GGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATCGGTTGTACTC 660
consensus_6580#1      GTTGTAAATTC---TTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTG 122
                      *  *** ****   *  **  **** ** **    ****      *  **   ***  * 

consensus_6580#0      GAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCA 720
consensus_6580#1      AAG----AGTTGGTTTACA-TAATGA-AGAATTATTC----GATAAAGGCAAATCCCATA 172
                       **    *****  * **  * **** * *** ***     *****   ****      *

consensus_6580#0      TTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAAT-ATAAGG 779
consensus_6580#1      GTCGAATATCACAGCCA-ATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA-- 229
                       *   *    *  **** *   ** **  * **  *  *  * ***  * * * ****  

consensus_6580#0      AAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTT 839
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      ATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAA 899
consensus_6580#1      ------------------------------------------------------------
                                                                                  

consensus_6580#0      TGTTAGTTTTC 910
consensus_6580#1      -----------