cluster # 6587

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Schistosoma mansoni
cluster # 6587 cluster # 6587 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6587#0 length = 519 sequences # 3

consensus_6587#1 length = 371 sequences # 1

consensusID : consensus_6587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 519
fasta sequence

                              [ACGAGCTAAACGAATATATCGTACCTATATGACGGCTAAACGTTTTTGTCCAGCTTGGTTGTTAAATCAAAATCCTATTATTTCAACACCACGACATACTTTGAATAATGAAGATCAAATGAATTATTATATTTCCCAACCATGGACTAAAATAGCTGAAAGTTTAACAACTGTAATCAATGACAATGTTCTTGATGATGATGATGACGATCATACTACTGCTACTACACAATATAGTAGTATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAAGTGATTCCGATCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAATGATGATGACGACGACGACGATGATGATGATGNAAGAAGAAG]

[+] EMBL CD085222             [ACGAGCTAAACGAATATATCGTACCTATATGACGGCTAAACGTTTTTGTCCAGCTTGGTTGTTAAATCAAAATCCTATTATTTCAACACCACGACATACTTTGAATAATGAAGATCAAATGAATTATTATATTTCCCAACCATGGACTAAAATAGCTGAAAGTTTAACAACTGTAATCAATGACAATGTTCTTGATGATGATGATGACGATCATACTACTGCTACTACACAATATAGTAGTATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAAGTGATTCCGATCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAATGATGATGA                                 ]
[-] EMBL CD161572             [                                                                                                                                                                                            TTCTTGATGATGATGATGACGATCATACTACTGCTACTACACAATATAGTAGTATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAAGTGATTCCGATCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAATGATGATGACGACGACGACGA                     ]
[+] EMBL SMAA40617            [                                                                                                                                                                                                                     TACTACTGCTACTACACAATATAGTAGTATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAAGTGATTCCGATCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAATGATGATGACGACGACGACGATGATGATGATGNAAGAAGAAG]




>consensus_6587#0
ACGAGCTAAACGAATATATCGTACCTATATGACGGCTAAACGTTTTTGTCCAGCTTGGTT
GTTAAATCAAAATCCTATTATTTCAACACCACGACATACTTTGAATAATGAAGATCAAAT
GAATTATTATATTTCCCAACCATGGACTAAAATAGCTGAAAGTTTAACAACTGTAATCAA
TGACAATGTTCTTGATGATGATGATGACGATCATACTACTGCTACTACACAATATAGTAG
TATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAAGTGATTCCGATCGTCA
CCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACC
AATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGA
AGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAATGA
TGATGACGACGACGACGATGATGATGATGNAAGAAGAAG

consensusID : consensus_6587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [CAACGAGCATGATCCAATGTTAGTTGATGTTATGTTGTAGCTAACTCTAGCTCACATTCATCTTCATCATCATATTCTTCTTCTTCTTCTTCATCATCATCATCGTCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACCAAACAATGATGATGATGACGACGACGATGATGATGATGAAGAAGAAGAAGAAGAATATGATGATGAAGATGAATGTGAGCTAGAGTTAG]

[-] EMBL CD068464             [CAACGAGCATGATCCAATGTTAGTTGATGTTATGTTGTAGCTAACTCTAGCTCACATTCATCTTCATCATCATATTCTTCTTCTTCTTCTTCATCATCATCATCGTCGTCACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACCAAACAATGATGATGATGACGACGACGATGATGATGATGAAGAAGAAGAAGAAGAATATGATGATGAAGATGAATGTGAGCTAGAGTTAG]




>consensus_6587#1
CAACGAGCATGATCCAATGTTAGTTGATGTTATGTTGTAGCTAACTCTAGCTCACATTCA
TCTTCATCATCATATTCTTCTTCTTCTTCTTCATCATCATCATCGTCGTCACCACCGTCA
TCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAACCAATTTTAAC
GAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAAGAAGAAAACGA
TATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACCAAACAATGATGATGATGA
CGACGACGATGATGATGATGAAGAAGAAGAAGAAGAATATGATGATGAAGATGAATGTGA
GCTAGAGTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6587#0      ACGAGCTAAACGAATATATCGTACCTATATGACGGCTAAACGTTTTTGTCCAGCTTGGTT 60
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      GTTAAATCAAAATCCTATTATTTCAACACCACGACATACTTTGAATAATGAAGATCAAAT 120
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      GAATTATTATATTTCCCAACCATGGACTAAAATAGCTGAAAGTTTAACAACTGTAATCAA 180
consensus_6587#1      ---------------------------------------------------------CAA 3
                                                                               ***

consensus_6587#0      TGACAATGTTCTTGATGATGATGATGACGATCATACTACTGCTA-CTACACAATATAGTA 239
consensus_6587#1      CGAGCATGATCC-AATGTTAGT--TGATG-TTATGTTGTAGCTAACTCTAGCTCACATTC 59
                       **  *** **   *** *  *  *** * * **  *   **** **  *    * * * 

consensus_6587#0      GTATTAATAATCAAAAAGAAACATGTTTGCTCGATGAGTATTCAA-GTGATTCCGATCGT 298
consensus_6587#1      ATCTTCATCATC--------ATATTCTTCTTC--TTCTTCTTCATCATCATCATCGTCGT 109
                       * ** ** ***        * **  **  **  *   * ****   * **     ****

consensus_6587#0      CACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAA 358
consensus_6587#1      CACCACCGTCATCTTCATTTTGATAATGATGATAATGGCGATGGTGATTCGTTGGTAGAA 169
                      ************************************************************

consensus_6587#0      CCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAA 418
consensus_6587#1      CCAATTTTAACGAATAGAGGTTCTTCACCTGATTCAGTCGCTTATTCACGTCTAACTGAA 229
                      ************************************************************

consensus_6587#0      GAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACAAAACAAT 478
consensus_6587#1      GAAGAAAACGATATAAATTCTGTACGAAATGTACAACTAACAAAACGTGAACCAAACAAT 289
                      **************************************************** *******

consensus_6587#0      GATGATGACGACGACGACGATGATGATGATGNA--AGAAGAAG----------------- 519
consensus_6587#1      GATGATGATGACGACGACGATGATGATGATGAAGAAGAAGAAGAAGAATATGATGATGAA 349
                      ******** ********************** *  ********                 

consensus_6587#0      ----------------------
consensus_6587#1      GATGAATGTGAGCTAGAGTTAG 371