cluster # 6621

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Schistosoma mansoni
cluster # 6621 cluster # 6621 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6621#0 length = 667 sequences # 3

consensus_6621#1 length = 94 sequences # 1

consensusID : consensus_6621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 667
fasta sequence

                              [TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACCATAGGTCCAAGAAGAGTTGGACCACCAGATTCAGAGCGCTCGGAAACTTCTTTATAGACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCAACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTCGAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCATACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCGGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGCAGNTGAATCA]

[+] EMBL CD097866             [TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACCATAGGTCCAAGAAGAGTTGGACCACCAGATTCAGAGCGCTCGGAAACTTCTTTATAGACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCAACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTCGAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCATACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGC                                                                                                                                                                                                                                  ]
[-] EMBL CD123060             [                                                                                                                                                                                                                                                                                                                                                       AGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCGGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGT                                                              ]
[+] EMBL CD072241             [                                                                                                                                                                                                                                                                                                                                                                                               TGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCAGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGCAGNTGAATCA]




>consensus_6621#0
TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACC
ATAGGTCCAAGAAGAGTTGGACCACCAGATTCAGAGCGCTCGGAAACTTCTTTATAGACG
ACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCAACA
CCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTCGAA
AATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCATAC
AAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAACGCA
GAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACC
TGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCGGTC
TTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAA
TGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTT
ACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGCAGN
TGAATCA

consensusID : consensus_6621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence

                              [CTTTTTGTAAGCCATAAACTGATAATATTGGAACAGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT]

[+] EMBL CD150376             [CTTTTTGTAAGCCATAAACTGATAATATTGGAACAGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT]




>consensus_6621#1
CTTTTTGTAAGCCATAAACTGATAATATTGGAACAGATCCTCACTGATTGTAAGATCACC
ACCGTCTAGATCGCCCATTGCATCTATTTCATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6621#0      TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACC 60
consensus_6621#1      --------------------------CTTTTTGTAAGCCATAAACTGATAATATTGGAAC 34
                                                 * * * * * * * **   **  *  *  ** *

consensus_6621#0      ATAGGTCCAAGAAGAGTTGGACCACCAG-ATTCAGAGCGCTCG--GAAACTTCTTTATAG 117
consensus_6621#1      AGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT 94
                      * *    **   *  **  ** *****   *  *** *** *   * * **  ** **  

consensus_6621#0      ACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCA 177
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      ACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTC 237
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      GAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCA 297
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      TACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAAC 357
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      GCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCC 417
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      ACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCG 477
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      GTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATAC 537
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      AAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTT 597
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      TTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGC 657
consensus_6621#1      ------------------------------------------------------------
                                                                                  

consensus_6621#0      AGNTGAATCA 667
consensus_6621#1      ----------