cluster # 6630

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6630 cluster # 6630 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6630#0 length = 983 sequences # 3

consensus_6630#1 length = 380 sequences # 1

consensusID : consensus_6630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 983
fasta sequence

                              [GAGCCATATTCGGCACGAGGAG-AAATACAAGAGTGAAGATAAT--CATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCTAAACAAC-ATTTTANTAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTNNAC-AGTATGCAGAAAATAACACTATN]

[+] EMBL CD081709             [GAGCCATATTCGGCACGAGGAG AAATACAAGAGTGAAGATAAT  CATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCTAAACAAC ATTTTANTAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTNNAC AGTATGCAGAAAATAACACTATN]
[+] EMBL CD078526             [            attatctGAGAAAATACAAGAATGAAGATAATCACATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATACAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAG                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD072995             [                                                                                                                                                                                                                                                                                                                                                                                                                                           AGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTTTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCT AACAACAATTTTATAAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCACAAT AACAAGTATGCAGAAATAAACACTATt]




>consensus_6630#0
GAGCCATATTCGGCACGAGGAGAAATACAAGAGTGAAGATAATCATTGTTATCCTTCATA
TTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGT
GACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGAT
GAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCG
AACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGA
CATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGT
TCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAA
CGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCT
TATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATA
AAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGA
TCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTT
TCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTA
TCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATC
ATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAA
ACTAATCCTACTAATATATCTGATCCATCTAAACAACATTTTANTAATCCTAATCAAAAT
AAATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTNNAC
AGTATGCAGAAAATAACACTATN

consensusID : consensus_6630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATCAAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATGAAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAAATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATAACAAGTATGCAGAAATAAACACT]

[-] EMBL CD073687             [AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATCAAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATGAAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAAATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATAACAAGTATGCAGAAATAAACACT]




>consensus_6630#1
AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCC
TTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCT
ACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATCAAG
TTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATGAAA
CTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAAATA
GAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATAACA
AGTATGCAGAAATAAACACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6630#0      GAGCCATATTCGGCACGAGGAGAAATACAAGAGTGAAGATAATCATTGTTATCCTTCATA 60
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      TTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGT 120
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      GACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGAT 180
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      GAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCG 240
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      AACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGA 300
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      CATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGT 360
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      TCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAA 420
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      CGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCT 480
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      TATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATA 540
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      AAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGA 600
consensus_6630#1      ------------------------------------------------------------
                                                                                  

consensus_6630#0      TCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTT 660
consensus_6630#1      ---AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTT 57
                         *********************************************************

consensus_6630#0      TCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTA 720
consensus_6630#1      TCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTA 117
                      ************************************************************

consensus_6630#0      TCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATC 780
consensus_6630#1      TCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATC 177
                      ****************************** * * *****  ****** * **** ****

consensus_6630#0      ATGTACAACACTTATTTTAAGG-ATCATAGATGAAGGATTTGTT-TATTTATTTTTAATG 838
consensus_6630#1      AAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATG 237
                      * ** * **     **** *   *  ***    ** *    *   *   * **** ****

consensus_6630#0      AAACTAATCCTACTAATATATCTGATCCATCTAAACAACATTTTANTAATCCTAATCAAA 898
consensus_6630#1      AAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAA 297
                      **********************************  * *** ***  ******** ****

consensus_6630#0      ATA-AATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTN 957
consensus_6630#1      ATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATA 357
                      *** ***************************  ********** ********** ** * 

consensus_6630#0      NACAGTATGCAGAAAATAACACTATN 983
consensus_6630#1      ACAAGTATGCAGAAATAAACACT--- 380
                         ************  ******