cluster # 6637

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Schistosoma mansoni
cluster # 6637 cluster # 6637 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6637#0 length = 565 sequences # 1
consensus_6637#1 length = 390 sequences # 1

consensus_6637#2 length = 382 sequences # 1
consensus_6637#3 length = 360 sequences # 1

consensusID : consensus_6637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGATGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAGTATCAAAAGGAATAAAAATACCAGAAGCGCATCA]

[+] EMBL CD078693             [AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGATGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAGTATCAAAAGGAATAAAAATACCAGAAGCGCATCA]




>consensus_6637#0
AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAGAAATTAATA
CCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGATGCTGAATTA
AAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAA
GAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACG
GTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCA
AGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACG
AAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCC
CCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAA
ATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAGTATCAAAAG
GAATAAAAATACCAGAAGCGCATCA

consensusID : consensus_6637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [TGAAAAGAGAAAATAAGTTAGATGGTCAGTATCTAAAGGAAAAAAAATACCAGAAGCGCGACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACCTAT]

[-] EMBL CD073156             [TGAAAAGAGAAAATAAGTTAGATGGTCAGTATCTAAAGGAAAAAAAATACCAGAAGCGCGACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACCTAT]




>consensus_6637#1
TGAAAAGAGAAAATAAGTTAGATGGTCAGTATCTAAAGGAAAAAAAATACCAGAAGCGCG
ACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGAT
TCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAA
GCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGA
AAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGG
GGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATC
AAAGTGGAAAATGAAATGAATAAAACCTAT

consensusID : consensus_6637#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [CGAATACTAGACGAGGAGGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAAAAGTGACGAATCAGAAGAGAACAAGTGAGGAGAAGGGAAGAAGAGAAGGTGAGTAAATCGCCCCGAGGGTGAGGATAGAACTTAGAAAGCTGGTGGATAATCAAGGGGAAATGATTGAAAAACC]

[+] EMBL CD077824             [CGAATACTAGACGAGGAGGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAAAAGTGACGAATCAGAAGAGAACAAGTGAGGAGAAGGGAAGAAGAGAAGGTGAGTAAATCGCCCCGAGGGTGAGGATAGAACTTAGAAAGCTGGTGGATAATCAAGGGGAAATGATTGAAAAACC]




>consensus_6637#2
CGAATACTAGACGAGGAGGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAAT
ACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATC
CTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGT
GAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAG
CAGGNAAAAAGAAAGAAAAAGTGACGAATCAGAAGAGAACAAGTGAGGAGAAGGGAAGAA
GAGAAGGTGAGTAAATCGCCCCGAGGGTGAGGATAGAACTTAGAAAGCTGGTGGATAATC
AAGGGGAAATGATTGAAAAACC

consensusID : consensus_6637#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGAAAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAA]

[+] EMBL CD088493             [AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGAAAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAA]




>consensus_6637#3
AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGA
AAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGAT
AAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAACA
AATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAAT
GAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGT
TAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6637#1      ------------------------------------------------------------
consensus_6637#2      ------------------------------------------------------------
consensus_6637#0      ---------AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAG 51
consensus_6637#3      AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGA 60
                                                                                  

consensus_6637#1      -------------------------------------------------TGAAAAGAGAA 11
consensus_6637#2      ------------------------------------------CGAATACTAGACGAGGAG 18
consensus_6637#0      AAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGAT 111
consensus_6637#3      AAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGAT 120
                                                                          *    ** 

consensus_6637#1      AATAAGTTAGAT----GGTCAGTATC-TAAAGGAAAAAAAATACCAGAAGCGCGACAGAA 66
consensus_6637#2      GCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAA 78
consensus_6637#0      GCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAA 171
consensus_6637#3      AAGAAATTAATACC--AACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAA 178
                          * ***           *    *     * ******************** ******

consensus_6637#1      CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 126
consensus_6637#2      CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 138
consensus_6637#0      CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 231
consensus_6637#3      CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 238
                      ************************************************************

consensus_6637#1      ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 186
consensus_6637#2      ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 198
consensus_6637#0      ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 291
consensus_6637#3      ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 298
                      ************************************************************

consensus_6637#1      GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 246
consensus_6637#2      GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAA 258
consensus_6637#0      GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 351
consensus_6637#3      GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 358
                      ******************************************** * *************

consensus_6637#1      AAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGT 306
consensus_6637#2      AA-GTGACGAA-TCAGAAGAGAAC--AAGTGAGGAGAA-GGGAAGAAGAGAAGGTGA-GT 312
consensus_6637#0      AAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGT 411
consensus_6637#3      AA---------------------------------------------------------- 360
                      **                                                          

consensus_6637#1      AAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTG 366
consensus_6637#2      AAATCGCCCC--GAGGGTGAGGATA-GAACTTAGAAA-GCTGGTGGAT--AATCAAG--G 364
consensus_6637#0      AAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTG 471
consensus_6637#3      ------------------------------------------------------------
                                                                                  

consensus_6637#1      GAAAATGAAATGAATAAAACCTAT------------------------------------ 390
consensus_6637#2      GGAAATGAT-TGAA--AAACC--------------------------------------- 382
consensus_6637#0      GAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAG 531
consensus_6637#3      ------------------------------------------------------------
                                                                                  

consensus_6637#1      ----------------------------------
consensus_6637#2      ----------------------------------
consensus_6637#0      TATCAAAAGGAATAAAAATACCAGAAGCGCATCA 565
consensus_6637#3      ----------------------------------