cluster # 6639

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Schistosoma mansoni
cluster # 6639 cluster # 6639 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6639#0 length = 761 sequences # 3

consensus_6639#1 length = 147 sequences # 1

consensusID : consensus_6639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 761
fasta sequence

                              [GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTGGATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGATGCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACTTTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTGTACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT]

[+] EMBL CD078717             [GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTGGATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGATGCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGG                                                                                                                                                  ]
[+] EMBL CD118244             [                                                                                                                                            AGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATCAATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD073180             [                                                                                                                                                                                                                                         TCAGCCGGATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAATTGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGCGTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACTTTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCAAATCCGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATATGTAAAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCAATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACTTTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTGTACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT]




>consensus_6639#0
GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTG
GATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGAT
GCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATC
AATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCG
GATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAAT
TGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGC
GTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACT
TTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATC
CGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATAT
GTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCA
ATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACT
TTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTG
TACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT

consensusID : consensus_6639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 147
fasta sequence

                              [TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCAGAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGTAGTTCAATACGTAGTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC]

[+] EMBL CD095492             [TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCAGAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGTAGTTCAATACGTAGTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC]




>consensus_6639#1
TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCAGAAG
GAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGTAGTTCAATACGTAGTCCCCAA
GGCGACAACGAACCCGCCAGGAAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6639#0      GTAACACGTTAATAAACTGTTAGTTTCGCCAGACCGATGCTGGAAAACCTTGGGATGTTG 60
consensus_6639#1      ----TACGCGCATCTGCCATTAGGTCAGACACATCTTTCTTCAAAGCATTTGGGTCGCCA 56
                           ***   **   *  **** *  * ** * *  *  *  **    *****  *   

consensus_6639#0      GATTCTCCTTCTGGCGACCCAAATGCTTTGAAGAAAGATGTGTCTGACCTAATGGCAGAT 120
consensus_6639#1      GAAGGAGAATCCAACATCCCAAGGTTTTCCAGCATCGGTATGT--AGTTCAATAC--GTA 112
                      **       **   *  *****    **  *  *  * * ***       ***    *  

consensus_6639#0      GCGCGTAAATCAAGGAAGGCAGTATTCAGAAGAACAATCGATTATAATGCTTCTGCCATC 180
consensus_6639#1      GTCCCCAAGGCGACAACGAACCCGCCAGGAAAAGC------------------------- 147
                      *  *  **  * *  * *          *** * *                         

consensus_6639#0      AATTACCTTCAAAACAGGATTTGGGTCAGTAGGGACTTAGACCGTCCAATGCTTCAGCCG 240
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      GATTACTTGTGGAGTCCTAAGTTGTGTCCTCCTAGGAGTTATATGGACTCTCCCATGAAT 300
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      TGCGTCATGTCGAAGCCTGTTCGTACATCTACTAACAAAAATAAATGCCCCATATATTGC 360
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      GTTTGTTGGACACCTGAAGGGAGGCGGTTGATAACAGGAGCTTTCAGTGGTGAGTTTACT 420
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      TTGTGGAATGGTTTGACGTTCAATTTCGAGACTATTTTACAGGCCCATGAGTCGCANATC 480
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      CGTTGTATGAAATGGTCTCACAACGAAGAATGGTTACTCACTGCTGATCATTCTGGATAT 540
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      GTANAGTATTGGCAAGCTAATATGAACAATGTTGAAATGTATCAAGCACATAAGGAACCA 600
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      ATTCGTGGCGTAAGGTACGCTTTTCCTGGTTTGGAATCATCTTGTTCAGTTTCAACAACT 660
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      TTGACTCTACATAAAACGATGACGATATTTAACAACTGTCTAGATTTATTTTACAAATTG 720
consensus_6639#1      ------------------------------------------------------------
                                                                                  

consensus_6639#0      TACTGTTTATTTTTAAGCACAAAATACACCAGTTGTAAAAT 761
consensus_6639#1      -----------------------------------------