cluster # 6649

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Schistosoma mansoni
cluster # 6649 cluster # 6649 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6649#0 length = 884 sequences # 3

consensus_6649#1 length = 506 sequences # 1

consensusID : consensus_6649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 884
fasta sequence

                              [CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGTCTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGACTCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAATGAATCATANAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAATATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT]

[+] EMBL CD078967             [CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGTCTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGACTCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAATGAATCATANAATTCCAAATGTGTCCAAATGTATCTAC                                                                                                                                                                                                                                                           ]
[-] EMBL CD073420             [                                                                                                                                                                                                                                                                                                               GGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAATTTTCATCCTACTTATCGTCATTATACTCAGACTCAAATGGATGAAGATAGTTAATGAATCATAAAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAATATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT]
[+] EMBL SMAA18484            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTAT        ]




>consensus_6649#0
CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTAT
AAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAAT
ATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTA
TGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGTC
TAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGACTC
AACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACCGGCAACATTTGTCGG
TTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACAATT
GAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAGTAT
ATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCACAA
TTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAATGAAT
CATANAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAATATTCG
ACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGAATGTT
CGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCACATAAT
ACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAATAGAT
ATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT

consensusID : consensus_6649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TTTCTACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTACTTCATTCACGTCTATGAAACTAATGGCTACAAAGAAGTATATCGTTGGTGATTTTGGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCTGTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCATTACTCAAATTTGCTACTATTAAATCGATCATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCCATCTCNAGTGATGATCGAATCCCCG]

[-] EMBL CD178316             [TTTCTACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTACTTCATTCACGTCTATGAAACTAATGGCTACAAAGAAGTATATCGTTGGTGATTTTGGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCTGTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCATTACTCAAATTTGCTACTATTAAATCGATCATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTCCATCTCNAGTGATGATCGAATCCCCG]




>consensus_6649#1
TTTCTACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTACTTCATT
CACGTCTATGAAACTAATGGCTACAAAGAAGTATATCGTTGGTGATTTTGGTCCTACATC
AGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCTGTTTATGGTTA
ATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCATTACTCAAATT
TGCTACTATTAAATCGATCATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCT
AGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTAT
CTACAAAAATTTATTAATATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGC
ATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCGCCTTGTTTTTGACTTACCTTC
CATCTCNAGTGATGATCGAATCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6649#0      CATCTTTTTTAGTTTTTGGCAAGATGTATTATTCAGTATTCTAGAATGGAGTCATGTTAT 60
consensus_6649#1      -------------------------------------------------------TTTCT 5
                                                                              ** *

consensus_6649#0      AAACATGACAAGTGGATATTCAGCAACACTAATTGCTGGTATCTACAAAAATTTATTAAT 120
consensus_6649#1      ACGGTTTTGCAATAGCTACTCTTCAGTATACTTTGATCAAACCAATTA--CTTCATTCAC 63
                      *    *    * * * ** **  **  *    *** *   * * *  *   ** *** * 

consensus_6649#0      ATGCATTGAACTGGTTATTGTTTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTA 180
consensus_6649#1      GTCTATGAAACTA---ATGGCTACAAA-GAAGTATATCGTTGGTG----------ATTTT 109
                       *  **  ****    ** * * ***  * * **  *  *   *           **** 

consensus_6649#0      TGTGTTACA-CAATCCACCTCGCCTTGTTTTTGACTTACCTTCAAACGATTCTTTCTGGT 239
consensus_6649#1      GGTCCTACATCAGGCTATCTGTATTTATTCTTGATCAACAATGCCACCGTAACTCTTGCT 169
                       **  **** **  * * **    ** ** ****   **  *   **  *   *  ** *

consensus_6649#0      -CTAATGATGAATTTCTATTTGCTACAAAACCGTCTGTGGGTTTTAAATCATCAAAAGAC 298
consensus_6649#1      GTTTATGGTTAATTGTTGTTTAATTTTGCAACTCGGGAGCAATTGAAACCATTCTCACCA 229
                        * *** * ****  * ***  *     * *    * *   ** *** ***    *   

consensus_6649#0      TCAACGGTATTTAATTCAGTCAAAGACAATTCATCACATTTCACACC-GGCAACATTTGT 357
consensus_6649#1      TTACTCAAATTTGCTACTATTAAA--TCGATCATCTTTTTTAGTTTTTGGCAAGATGTAT 287
                      * *     ****  * *  * ***      *****   ***       ***** ** * *

consensus_6649#0      CGGTTATGCACCATCAACAAAATATGCTGAACCATTACCATGGGATATTGTTGATCCACA 417
consensus_6649#1      ----TATTCAGTATTCTAGAATGGAGTCATGTTATAAACATGACAAGTGGATATTCAGCA 343
                          *** **  **     **    *       ** * ****  *  * * *  **  **

consensus_6649#0      ATTGAACAATGGTGGGTTTGAAGAAACATGGAATACTAAAAATTCAAGTGTGATTCCAAG 477
consensus_6649#1      AC--ACTAATTGCTGGTATCTACAAAAATTTATTAATATGCATTGAACTG--GTTATTGT 399
                      *   *  *** *  *** *  * *** **  * ** **   *** ** **   **     

consensus_6649#0      TATATCTGCAAGTATCAAGGCAACTATTGATCCTACAGATATACTTGTTGATGCAGTTCA 537
consensus_6649#1      TTCAATTGCACTACGTTATGCATTTCCCTATAGTATTTATGTGTTACACAATCCACCTCG 459
                      *  *  ****       * ***  *    **  **   ** *  *     ** **  ** 

consensus_6649#0      CA--ATTTTCATCCTACTTATCGTCATTATACTCAGACTCANATGGATGAAGATAGTTAA 595
consensus_6649#1      CCTTGTTTTTGACTTACCTTCCATC--TCNAGTGATGATCGAATCCCCG----------- 506
                      *    ****   * *** *  * **  *  * * *   **  **    *           

consensus_6649#0      TGAATCATANAATTCCAAATGTGTCCAAATGTATCTACGTCATTTCTTCCTGAAATAAAT 655
consensus_6649#1      ------------------------------------------------------------
                                                                                  

consensus_6649#0      ATTCGACCATAATAATACTCACACTATGTACATTTCATCATATATATTATTCAGGTTAGA 715
consensus_6649#1      ------------------------------------------------------------
                                                                                  

consensus_6649#0      ATGTTCGATTCTTTTTGTATTTCTGTGAAGAAAACAACATAACTAATCTTTTATATTCAC 775
consensus_6649#1      ------------------------------------------------------------
                                                                                  

consensus_6649#0      ATAATACCTGTCTTTCGCTGTTCCTCATAAGGAACAATTTCTTCTTTTTTATTTGTATAA 835
consensus_6649#1      ------------------------------------------------------------
                                                                                  

consensus_6649#0      TAGATATTACGTTTGATTTAAAACTATTGAAATAAAGGTATTTTCAGAT 884
consensus_6649#1      -------------------------------------------------