cluster # 6663

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Schistosoma mansoni
cluster # 6663 cluster # 6663 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6663#0 length = 651 sequences # 3

consensus_6663#1 length = 439 sequences # 1

consensusID : consensus_6663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 651
fasta sequence

                              [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTACTATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTAAATGTCTC-TCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG-G-AAATTT--GATTTAAATTAATTTGATGAACATCTTTATCAAATGATTGATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG]

[+] EMBL CD073686             [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTACTATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTAAATGTCTC TCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG G AAATTT  GATTTAAATTAATTTGATGAACATCTTTATCAAATGATTGATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG]
[-] EMBL AI381069             [                                                                                                                                                                                                                                                                                                                                                              GGCAATTTTAAATTTCTCGCCGGATAAACAGTTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATATCCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTGAGTAAATTTTCGATTT                                                                                     ]
[+] EMBL CD145708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTATTTCTTCTGGAATAGTGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATGTTGAAAAGTGACTG G AAATTT  GATTTAAATTAATTTGATGAACATCTT                                                               ]




>consensus_6663#0
TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA
TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC
TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTC
CTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTT
TCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTAC
TATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTA
AATGTCTCTCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATAT
CCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAG
TGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATG
TTGAAAAGTGACTGGAAATTTGATTTAAATTAATTTGATGAACATCTTTATCAAATGATT
GATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG

consensusID : consensus_6663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACAATTTACTGCGACTATTAATCTGTTTACAAAGGTTTTCTAACATTCTTAACGATTTATCCCGGCATTTTAATTTCTCTCGATTTACATTTTGGGATTGGGGTATTCAAACCGCGGATTTCCATTCTATCTAAACGACTGATCATAAAGTGACAG]

[+] EMBL AI723369             [TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATATATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTCTTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGTGGTTGTCTTCCTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTTCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACAATTTACTGCGACTATTAATCTGTTTACAAAGGTTTTCTAACATTCTTAACGATTTATCCCGGCATTTTAATTTCTCTCGATTTACATTTTGGGATTGGGGTATTCAAACCGCGGATTTCCATTCTATCTAAACGACTGATCATAAAGTGACAG]




>consensus_6663#1
TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA
TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC
TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGTGGTTGTCTTCC
TTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTTT
CATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACAATTTACTGCGACTA
TTAATCTGTTTACAAAGGTTTTCTAACATTCTTAACGATTTATCCCGGCATTTTAATTTC
TCTCGATTTACATTTTGGGATTGGGGTATTCAAACCGCGGATTTCCATTCTATCTAAACG
ACTGATCATAAAGTGACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6663#0      TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA 60
consensus_6663#1      TCTTTTTTCATTACTTTTTACTTGAAATCAGAAACGTACATAATTTAAAATACATAGATA 60
                      ************************************************************

consensus_6663#0      TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC 120
consensus_6663#1      TATATACAAATACACCAGACCATAAATAAATAATTTATAAACAAATCAACTAATTAGTTC 120
                      ************************************************************

consensus_6663#0      TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAGGTGGTTGTCTTC 180
consensus_6663#1      TTTGTCTTTCACGACGATGTTTATCATTTGTATTTTTACTACCCGTAG-TGGTTGTCTTC 179
                      ************************************************ ***********

consensus_6663#0      CTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTT 240
consensus_6663#1      CTTTATTACTATTTTTCTCCATTGATGTCGTCGTCTTCTTTTTCTTCGATGTTATTACTT 239
                      ************************************************************

consensus_6663#0      TCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTACTAATTTACTGCTAC 300
consensus_6663#1      TCATAACACGAGTTTTACTGATTTTGTTAGATGTCTTTTCTTTTAC-AATTTACTGCGAC 298
                      ********************************************** ********** **

consensus_6663#0      TATTAATCTGTTTACTACAGTTTTCCATACAATCTATAGGATTTAATCCAGGCAATTTTA 360
consensus_6663#1      TATTAATCTGTTTACAAAGGTTTTCTA-ACATTCTTAACGATTTA-TCCCGGCATTTT-- 354
                      *************** *  ****** * *** ***  * ****** *** **** ***  

consensus_6663#0      AATGTCTCTCAGATTTACCATTTTGTGAATTGTGGATTATTTCAAAACCAGCAGGAATAT 420
consensus_6663#1      AATTTCTCTC-GATTTAC-ATTTTG-GGATTGGGG--TATTC--AAACCGC---GGATTT 404
                      *** ****** ******* ****** * **** **  ****   *****     * ** *

consensus_6663#0      CCAAATCCAATCTTAAACGACGTACTAAATAAAGTGTACTAGCTATTTCTTCTGGAATAG 480
consensus_6663#1      CCA--TTCTATCT-AAACGACTGATCA--TAAAGTG-ACAG------------------- 439
                      ***  * * **** *******  *  *  ******* **                     

consensus_6663#0      TGGTTCCATTGAATTTATCATCATCAAGTGATAATAAATTTAGTAATCTTTCTGAAGATG 540
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      TTGAAAAGTGACTGGAAATTTGATTTAAATTAATTTGATGAACATCTTTATCAAATGATT 600
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      GATCACTGACAGATTGGTAAATATCAAACGAATTATCGGATGGCATCTTGG 651
consensus_6663#1      ---------------------------------------------------