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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence
[CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGGAC-ATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTATTNCTGA-TATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNT-ATTCGTGTA-CCTGTGATGTA-TTTTATGAAT-AAATCACAT]
[+] EMBL CD080214 [CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGGAC ATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTATTNCTGA TATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNT ATTCGTGTA CCTGTGATGTA TTTTATGAAT AAATCACAT]
[-] EMBL CD073869 [ AAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTAT GGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATT CTGATTATCTTTTATGAATTACATCATGTTAAGAAGGAATAGACTATTTAATTCGTGTACCCTGTGATGTATTTTTATGAATAAAATCACAT]
consensusID : consensus_6671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCTCATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT]
[+] EMBL CD079607 [TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCTCATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT]
consensusID : consensus_6671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[GCGGCACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATTCTG]
[+] EMBL CD083649 [GCGGCACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6671#0 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCT 60
consensus_6671#0 ---CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTG 57
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 CATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATT 120
consensus_6671#0 CAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATT 117
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 CAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATT 180
consensus_6671#0 AATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAG 177
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 AATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAG 240
consensus_6671#0 GATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTT 237
consensus_6671#2 -------------------------------------------------------GCGGC 5
consensus_6671#1 GATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTT 300
**
consensus_6671#0 ATT-GTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTAT 296
consensus_6671#2 ACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTAT 65
consensus_6671#1 ATT-GTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTAT 359
* * ************************* ****************************
consensus_6671#0 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 356
consensus_6671#2 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 125
consensus_6671#1 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 419
************************************************************
consensus_6671#0 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 416
consensus_6671#2 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 185
consensus_6671#1 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 479
************************************************************
consensus_6671#0 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 476
consensus_6671#2 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 245
consensus_6671#1 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 539
************************************************************
consensus_6671#0 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 536
consensus_6671#2 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 305
consensus_6671#1 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 599
************************************************************
consensus_6671#0 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACAT 596
consensus_6671#2 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACAT 365
consensus_6671#1 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT------ 653
******************************************************
consensus_6671#0 CAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAAT 656
consensus_6671#2 CAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAAT 425
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 GCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGA 716
consensus_6671#2 GCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGA 485
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 AATAAATATTATGGGACATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTA 776
consensus_6671#2 AATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTA 545
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 TTNCTGATATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNTATTCGTGTA 836
consensus_6671#2 TTCTG------------------------------------------------------- 550
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 CCTGTGATGTATTTTATGAATAAATCACAT 866
consensus_6671#2 ------------------------------
consensus_6671#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||