|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1035 fasta sequence
[ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA]
[+] EMBL CD079716 [ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGG ]
[-] EMBL CD073974 [ TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACCCCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTTTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCCCCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA]
[+] EMBL AI820486 [ GTCAGTGTACGAAAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCCTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAAT AAAATTATTTTc]
consensusID : consensus_6675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence
[TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA]
[+] EMBL CD079385 [TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6675#0 -ANAATTCGGCACGAGG--ACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 57
consensus_6675#1 TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 60
* * * **** ** **************************************
consensus_6675#0 TTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 117
consensus_6675#1 TTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 120
************ ***********************************************
consensus_6675#0 TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 177
consensus_6675#1 TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 180
************************************************************
consensus_6675#0 ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 237
consensus_6675#1 ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 240
************************************************************
consensus_6675#0 CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 297
consensus_6675#1 CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 300
************************************************************
consensus_6675#0 GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 357
consensus_6675#1 GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 360
************************************************************
consensus_6675#0 GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 417
consensus_6675#1 GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 420
************************************************************
consensus_6675#0 TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 477
consensus_6675#1 TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 480
************************************************************
consensus_6675#0 TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 537
consensus_6675#1 TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 540
************************************************************
consensus_6675#0 GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 597
consensus_6675#1 GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 600
************************************************************
consensus_6675#0 TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 657
consensus_6675#1 TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 660
************************************************************
consensus_6675#0 TGAACAATTGAAGACTATGG-CTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATC 716
consensus_6675#1 TGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA------- 713
******************** ********************************
consensus_6675#0 CATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATT 776
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAAT 836
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTC 896
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 AAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTAT 956
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAA 1016
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 AGAAATAAAAATTATTTTA 1035
consensus_6675#1 -------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||