cluster # 6687

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Schistosoma mansoni
cluster # 6687 cluster # 6687 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6687#0 length = 629 sequences # 3

consensus_6687#1 length = 261 sequences # 1

consensusID : consensus_6687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 629
fasta sequence

                              [TTGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC]

[+] EMBL CD079801             [TTGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCAAGAACTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCA ]
[-] EMBL CD074059             [                 TACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC]
[-] EMBL CD076556             [                                                                                                                         TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGACCCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCACCGGTGTTAATCCAATAGACCAAAATGAGAAAGATCCCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGACCAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATACCCTTGAAAGAATATCATCGTCCAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC]




>consensus_6687#0
TTGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAAT
GTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAA
TTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATA
AAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGT
TCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGT
GAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCG
CAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAA
CAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAG
AAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAA
GCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAA
TCTGAAAGCGTCAATAAATAGATTATCAC

consensusID : consensus_6687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAGATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCNAGAACTATATAGTT]

[+] EMBL CD139830             [CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAGATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCNAGAACTATATAGTT]




>consensus_6687#1
CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAG
ATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATG
TTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAAT
TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAA
AAGACCNAGAACTATATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6687#0      -----------------------------------------------------------T 1
consensus_6687#1      CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAG 60
                                                                                  

consensus_6687#0      TGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATG 61
consensus_6687#1      ATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATG 120
                           *     *  ******************************** *************

consensus_6687#0      TTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAAT 121
consensus_6687#1      TTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAAT 180
                      ************************************************************

consensus_6687#0      TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAA 181
consensus_6687#1      TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAA 240
                      ************************************************************

consensus_6687#0      AAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTT 241
consensus_6687#1      AAGACCNAGAACTATATAGTT--------------------------------------- 261
                      *** ** *** **********                                       

consensus_6687#0      CATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTG 301
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      AACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGC 361
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      AGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAAC 421
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      AAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGA 481
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      AGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAG 541
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      CAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAAT 601
consensus_6687#1      ------------------------------------------------------------
                                                                                  

consensus_6687#0      CTGAAAGCGTCAATAAATAGATTATCAC 629
consensus_6687#1      ----------------------------