cluster # 6693

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Schistosoma mansoni
cluster # 6693 cluster # 6693 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6693#0 length = 757 sequences # 3

consensus_6693#1 length = 408 sequences # 1

consensusID : consensus_6693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 757
fasta sequence

                              [TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTATAAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAAC-ATCAAACAT-ATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT]

[+] EMBL CD079907             [TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTATAAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAAC ATCAAACAT ATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTT ]
[-] EMBL CD074104             [                                                                                            TCGGAANAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAACAATC AACATAATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT]
[+] EMBL CD196968             [                                                                                                                                                                                                                                                 TGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAATAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAAATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACAATACATAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATCAA                                                                                                                              ]




>consensus_6693#0
TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTAT
AAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTA
ATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAG
AATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTT
ATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAA
CACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGT
GAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCA
GATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACT
GATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATT
TCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAA
CATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTA
GATGTTTAATTGTTGTTGTCATATAATTCTCAACATCAAACATATATTTTCCTCTTTCAA
ACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT

consensusID : consensus_6693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [AAAAGGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAACATGGGCCAGCACAGAGTCGTCTCAATCACTA]

[-] EMBL CD190048             [AAAAGGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAACATGGGCCAGCACAGAGTCGTCTCAATCACTA]




>consensus_6693#1
AAAAGGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAAT
CATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTG
TAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAG
TGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTC
AGCACTTTGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTT
AGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTC
AATCATCAAGGATAAACATGGGCCAGCACAGAGTCGTCTCAATCACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6693#0      TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTAT 60
consensus_6693#1      ------------------------------------------------------------
                                                                                  

consensus_6693#0      AAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTA 120
consensus_6693#1      ------------------------------------------------------------
                                                                                  

consensus_6693#0      ATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAG 180
consensus_6693#1      ------------------------------------------------------------
                                                                                  

consensus_6693#0      AATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTT 240
consensus_6693#1      --------------------------------------------AAAAGGAGTATACCTT 16
                                                                   *** ***********

consensus_6693#0      ATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAA 300
consensus_6693#1      ATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAA 76
                      ************************************************************

consensus_6693#0      CACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGT 360
consensus_6693#1      CACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGT 136
                      ************************************************************

consensus_6693#0      GAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCA 420
consensus_6693#1      GAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCA 196
                      ************************************************************

consensus_6693#0      GATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACT 480
consensus_6693#1      GATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACT 256
                      ************************************************ ** ********

consensus_6693#0      GATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATT 540
consensus_6693#1      GATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATT 316
                      ************************************************************

consensus_6693#0      TCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAA 600
consensus_6693#1      TCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAA 376
                      ****************************************** *****************

consensus_6693#0      CATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTA 660
consensus_6693#1      CATGGGCCAG---CACAGAGTCGTCTCAATCACTA------------------------- 408
                      **********    * * * * ***  *** *  *                         

consensus_6693#0      GATGTTTAATTGTTGTTGTCATATAATTCTCAACATCAAACATATATTTTCCTCTTTCAA 720
consensus_6693#1      ------------------------------------------------------------
                                                                                  

consensus_6693#0      ACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT 757
consensus_6693#1      -------------------------------------