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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence
[CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCAAATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAAAGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACATGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAATATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTTTTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTAGTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCAAAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTCTAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTGGAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGAATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCGCAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCCAATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCTCAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAACTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGATTGTGAAACAAGACTACTGAACAGATTATCTTGATGCGGTTAGTTCTTCTCTAAATATTAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD080138 [CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCAAATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAAAGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACATGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAATATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTTTTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTAGTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCAAAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTCTAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTGGAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGAATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCC ]
[-] EMBL CD195448 [ ATGCTTTAATCCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCGCAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCCAATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCTCAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCG ]
[-] EMBL AI976299 [ TCTGACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTGTGAGTCGCTTACTTCTCTGGATGCATCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAACATATTTGGCCTCAAAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAACTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGATTGTGAAACAAGACTACTGAACAGATTATCTTGATGCGGTTAGTTCTTCTCTAAATATTAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
consensusID : consensus_6700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAACTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGATTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATATTAATATAC]
[-] EMBL CD074149 [TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAACTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAAGGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGATTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATATTAATATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6700#0 CATGCAATTAGATGAGAACCGTATACTTCTACTCGTATCAGGGCAACTTTCCTATTATCA 60
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AATTTTCTTCATAAGGTTACAGTAAGGACAATACTACTATTCATAAGGCACTGGACAGAA 120
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AGATAAACTCCCAGAAATGTACTGAGGTTTCTGTGACAAAGCGAAGGAAACTAGTCAACA 180
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TGACAACTATGACCTTTATCGCTATTAATTTTAGGTTAAAGTACTGGTGGGAAATTAAAA 240
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TATGAGTTTTCTCCAATATGCTCATCACTGTTTTATTCTTATAAGTCTATTATGCCTGTT 300
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TTACTAATCGTCAACTCATTTTGTGGACTATAGAAGTTAAAACAAACCTATTTTTGACTA 360
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GTCATACTTAGTTGCAAATCATAACCTGTAAAACAGGGCGAATAATATCTAAAGAAGTCA 420
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AAATAACCATTCCGTTGAATAGTAACAAACAACTTATGTTTCAGATGGCTGAACTATTTC 480
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TAGACCCGTCTATTCGATCCTGGGTATTCCTTCCCCTTGTAATAATTACTTTCCTCTTTG 540
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GAGTTTTACGCCACTACATGACTATCATGTTCAGTAGTGAGAAAAAGGGTGAACTCGAGA 600
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 ATATCGGTGATAGGTAAAGCCCTGAGTTCAACATTNTTACCATTTCAGTCATGCTTTAAT 660
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CCGCAGCAGACTTTTACGTGAAAATGGAAGATTCTTGCCGGCAAAAGCTTTTAAAATGCG 720
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CAAGTATTTCTTCAATGATAAGGAGCATGGGTTTTTTAAAACACAAAAGCGAGAAAGTCC 780
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AATGAATAATCCGATGGCTGATCCTTCAATGGCAACTGAGATGCTTAGAAGCAATGCCCT 840
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CAATATGGTTCCAATGATTGTTATTGGCAGCTGGATCAACTGGGCTTTTTCAGGTTTTCT 900
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GACCACAAAAGTCCCGTTTCCACTCACTTATCGATTTAAGCCCATGCTTCAAAGGGGCTG 960
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TGAGTCGCTTACTTCTCTGGATGCACCTTGGGTTAGCTCTGCATCTTGGTATTTTCTGAA 1020
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CATATTTGGCCTCAGAAGTATGTATGGTTTGGTACTTGGTTCGGACAACGCAGCTGATAA 1080
consensus_6700#1 --------------------TGTATGGTTTGGTACTTGGTTGGGACAACGCAGCTGATAA 40
********************* ******************
consensus_6700#0 CTCGATGATTTTGACAGATCATCAAGTACCTACACCACAAGCTCCACAGGATATGCAAAA 1140
consensus_6700#1 CTTAATGATTTTGTCAGATCATCAAGTGCATACACCACAAGGTCCACAGGATATGCAAAA 100
** ********* ************* * *********** ******************
consensus_6700#0 GGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCACCAATGGGCTCTAGCAGA 1200
consensus_6700#1 GGCGTTCAAGGCAGAATGGGAAGCATTGGAAATAGTTGATCGCCAATGGGCTATAGCAGA 160
***************************************** ********** *******
consensus_6700#0 TTGTGAAACAAGACTACTGAACAGAT-TATCTTGATGCGGTTAGTTCTTCT-CTAAATAT 1258
consensus_6700#1 TTGTGAAACAAGAATGTTGATCAGATGTATCGTGATGCGTGTAGTTCTTATATTAAATAT 220
************* * *** ***** **** ******* ******** * *******
consensus_6700#0 TAATATACTTTGTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGC 1318
consensus_6700#1 TAATATAC---------------------------------------------------- 228
********
consensus_6700#0 TGCATTACCGTACTGCGTA 1337
consensus_6700#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||