cluster # 6731

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Schistosoma mansoni
cluster # 6731 cluster # 6731 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6731#0 length = 644 sequences # 2

consensus_6731#1 length = 556 sequences # 2

consensusID : consensus_6731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence

                              [CCTCCAGGCCAANAATTTGGCACGAGGACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATACCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATATTAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAATAAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTTT]

[+] EMBL CD081087             [CCTCCAGGCCAANAATTTGGCACGAGGACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATACCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATATTAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAATAAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTT ]
[-] EMBL CD074910             [                                                                                                                                                                                                                                                                     TCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTTT]




>consensus_6731#0
CCTCCAGGCCAANAATTTGGCACGAGGACTATTCAAAAAATATTAACCCCCCTTCTAGTA
GTTATGCAACTTTATACACCAATACCCTATGTATGCTGATAAATAGTTATTGTTTCATTC
TTTTCTCTATATTAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATT
TACCTAGTCACATTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATT
TAAATATACAATAAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAG
TGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCAT
TTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGA
TTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTT
TCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATT
ATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTT
CACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTTT

consensusID : consensus_6731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence

                              [ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATATCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTTATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATATTAGGCTTCTTTTTTAATTCCTCCAATAAATTCAATTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAATATTTTAATATACAATAAACCTTGTTCAGTTCACATTTATAGATTAATTAACCGGGTAATAGAGGGATTTATTTCACACTACCGGGGATAAAATTATATTTCACGGCGCCTTTATTTTATAAAGTACACACCTATTTTATGCTGCTGATGATGAGAAAATTTTTGGCGGCGTTTTTCTAAAAATCCCCCCACTACTTATTATGAAAATTTTTTC]

[+] EMBL AI447053             [ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATATCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTTATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATATTAGGCTTCTTTTTTAATTCCTCCAATAAATTCAATTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAATATTTTAATATACAATAAACCTTGTTCAGTTCACATTTATAGATTAATTAACCGGGTAATAGAGGGATTTATTTCACACTACCGGGGATAAAATTATATTTCACGGCGCCTTTATTTTATAAAGTACACACCTATTTTATGCTGCTGATGATGAGAAAATTTTTGGCGGCGTTTTTCTAAAAATCCCCCCACTACTTATTATGAAAATTTTTTC]
[+] EMBL AI559081             [                                                                                                    TCATATAAATATTATACTTTATTGTAACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATA CCCTATGTATGCTGAAAAATAGTTATTGTTTCATTCTTTTCTCTATAgtg                                                                                                                                                                                                                                                                                                                          ]




>consensus_6731#1
ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATA
TCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTT
ATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTT
ATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATAT
TAGGCTTCTTTTTTAATTCCTCCAATAAATTCAATTCCTATCTTATTTACCTAGTCACAT
TCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAATATTTTAATATACAATAA
ACCTTGTTCAGTTCACATTTATAGATTAATTAACCGGGTAATAGAGGGATTTATTTCACA
CTACCGGGGATAAAATTATATTTCACGGCGCCTTTATTTTATAAAGTACACACCTATTTT
ATGCTGCTGATGATGAGAAAATTTTTGGCGGCGTTTTTCTAAAAATCCCCCCACTACTTA
TTATGAAAATTTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6731#0      ------------------------------------------------------------
consensus_6731#1      ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATA 60
                                                                                  

consensus_6731#0      -------------------------------------CCTCCAGGCCAANAAT------- 16
consensus_6731#1      TCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTT 120
                                                           * * **    ** * *       

consensus_6731#0      -TTGGCACGAGG--ACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTT 73
consensus_6731#1      ATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTT 180
                       ***  ** *    **********************************************

consensus_6731#0      ATACACCAATA-CCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATAT 132
consensus_6731#1      ATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATAT 240
                      ****** **** ********************************* **************

consensus_6731#0      TAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACA 192
consensus_6731#1      TAGGCTTCTTTTTTAATTCCTCCAATAAATT-CAATTCCTATCTTATTTACCTAGTCACA 299
                      *************** *** ** * ** *** ** *************************

consensus_6731#0      TTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAAT 252
consensus_6731#1      TTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAA-TATTTTAATATACAAT 358
                      ************************* ***************** ***** **********

consensus_6731#0      AAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATT 312
consensus_6731#1      AAACCTTGTTCAGTTCA-CATTTATAGATTAATTAA-CCGGGTAATAGAGGGATTTA-TT 415
                      ***************** ****************** * ** ****** ******** **

consensus_6731#0      TCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTA 372
consensus_6731#1      TCA--CACTACCGGGGATAAAATTATA---TTTCACGGCGCCTTT-ATTTTATAAAGTAC 469
                      ***   * *** **  *****  ****   ** ** ***  **** **********    

consensus_6731#0      ACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAA 432
consensus_6731#1      ACACC----TATTTTATGCTGCTGA--TGATGAGAAAATTTTTGGCGGCGTT-TTTCTAA 522
                      *** *    ***********  ***  ***  * *** * *** ***   ** **** **

consensus_6731#0      ATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAA 492
consensus_6731#1      AAATCCCCCCA----CTACTTATTATGAAA-ATTTTTTC--------------------- 556
                      * ** *** **    ************* * *******                      

consensus_6731#0      CCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAA 552
consensus_6731#1      ------------------------------------------------------------
                                                                                  

consensus_6731#0      TTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCT 612
consensus_6731#1      ------------------------------------------------------------
                                                                                  

consensus_6731#0      ATTTTAAAAAAGTACTCATGAGCGTGTTTTTT 644
consensus_6731#1      --------------------------------