cluster # 6733

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Schistosoma mansoni
cluster # 6733 cluster # 6733 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6733#0 length = 619 sequences # 3

consensus_6733#1 length = 137 sequences # 1

consensusID : consensus_6733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 619
fasta sequence

                              [AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTTC]

[+] EMBL CD074948             [AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTT ]
[-] EMBL CD081126             [ AATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTT  ]
[-] EMBL CD077380             [                                                                                                                                          TCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTTC]




>consensus_6733#0
AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTG
TACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCA
GAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAA
GCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCT
TCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAA
GTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATA
TGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCT
GCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCT
AAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTC
CGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAA
TGAGCTTTGTCCCATTTTC

consensusID : consensus_6733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [TGCGCCATATAAATGGTAAAAAACATCAAAGGAATATGGGAATGTCGATGAGAATTAAAAGGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTATAACTCTGCTATAGGTTTCAGCTTCACAAGCA]

[+] EMBL CD083684             [TGCGCCATATAAATGGTAAAAAACATCAAAGGAATATGGGAATGTCGATGAGAATTAAAAGGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTATAACTCTGCTATAGGTTTCAGCTTCACAAGCA]




>consensus_6733#1
TGCGCCATATAAATGGTAAAAAACATCAAAGGAATATGGGAATGTCGATGAGAATTAAAA
GGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTATAACTCTGCTATAGG
TTTCAGCTTCACAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6733#0      AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTG 60
consensus_6733#1      -------TGCGCCATATAAATGGTAAAAAACATCAAAGGA-------ATATGGGAATGTC 46
                             *    ** ******   * * *  ** * ****       ** *   ***** 

consensus_6733#0      TACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCA 120
consensus_6733#1      GATGAGAATTAAAA-GGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTA 105
                       *  *   * *    * **   *    **      ***         * *****   * *

consensus_6733#0      GAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAA 180
consensus_6733#1      TAACTCTGCTATAGGTT-TCAGCTTCACAAGCA--------------------------- 137
                       **   *   *  * *  ***  *  **                                

consensus_6733#0      GCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCT 240
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      TCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAA 300
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      GTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATA 360
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      TGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCT 420
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      GCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCT 480
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      AAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTC 540
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      CGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAA 600
consensus_6733#1      ------------------------------------------------------------
                                                                                  

consensus_6733#0      TGAGCTTTGTCCCATTTTC 619
consensus_6733#1      -------------------