cluster # 6752

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Schistosoma mansoni
cluster # 6752 cluster # 6752 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6752#0 length = 787 sequences # 2

consensus_6752#1 length = 224 sequences # 2

consensusID : consensus_6752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 787
fasta sequence

                              [AATTCGGCACGAGGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTTGTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGGTTCTCGACACGTGAAATATGTTG-TATGACATCAGAAACTGACATGGATGATTCGTCTGGATTTATG-TTTCTGTACAGTTTTTGT-AATATATGTTTA]

[+] EMBL CD081450             [AATTCGGCACGAGGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTTGTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGGTTCTCGACACGTGAAATATGTTG TATGACATCAGAAACTGACATGGATGATTCGTCTGGATTTATG TTTCTGTACAGTTTTTGT AATATATGTTT ]
[-] EMBL CD075273             [                                                                                                                                                                                                                                                       AATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGTTTCTCGACACGTG AATATGTTGTTATGACATCAGAAACTGACATGGATGATTCGTCTTGA TTATGTTTTCTGTACAGTTTTTGTAAATATATGTTTA]




>consensus_6752#0
AATTCGGCACGAGGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAG
CAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTG
CAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCG
AAGGAGCGGCAGAGTTAGTTCCCCTGTTGTCTTAAGGGACAGTGAAGATATTTCTGAATC
CAAACCTAATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACA
GAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTAT
TGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTA
TGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTT
AATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACA
GCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTT
GGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGA
GCTCCTTGAAAAAGATGTAATCAAGTTTGGGTTCTCGACACGTGAAATATGTTGTATGAC
ATCAGAAACTGACATGGATGATTCGTCTGGATTTATGTTTCTGTACAGTTTTTGTAATAT
ATGTTTA

consensusID : consensus_6752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 224
fasta sequence

                              [ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG]

[-] EMBL CD152742             [ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG]
[-] EMBL CD152620             [cCCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAG]




>consensus_6752#1
ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTT
ACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCAT
GCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAAT
GATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6752#0      --------------------------------AATTCGGCACGAGGAAGATGAAGAGTTT 28
consensus_6752#1      ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTT 60
                                                       * *   **  * ***************

consensus_6752#0      ACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCAT 88
consensus_6752#1      ACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCAT 120
                      ************************************************************

consensus_6752#0      GCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAAT 148
consensus_6752#1      GCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAAT 180
                      ************************************************************

consensus_6752#0      GATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTT 208
consensus_6752#1      GATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG---------------- 224
                      ************************************* ******                

consensus_6752#0      GTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTG 268
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      TTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAA 328
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      CTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGAT 388
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      GCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCC 448
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      GTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGAC 508
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      ATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTT 568
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      CGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAAC 628
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      AATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTT 688
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      GGGTTCTCGACACGTGAAATATGTTGTATGACATCAGAAACTGACATGGATGATTCGTCT 748
consensus_6752#1      ------------------------------------------------------------
                                                                                  

consensus_6752#0      GGATTTATGTTTCTGTACAGTTTTTGTAATATATGTTTA 787
consensus_6752#1      ---------------------------------------