cluster # 6761

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Schistosoma mansoni
cluster # 6761 cluster # 6761 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6761#0 length = 793 sequences # 3

consensus_6761#1 length = 446 sequences # 1

consensusID : consensus_6761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 793
fasta sequence

                              [CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCTAAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTCAAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGATGATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAACAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGATCCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTCCCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGATCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG-CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACATGTTC]

[+] EMBL CD081592             [CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCTAAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTCAAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGATGATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAACAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGATCCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTCCCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGATCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACATGTTC]
[+] EMBL AI559068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGATTTAGCCAANCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACAT    ]
[+] EMBL AI739688             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCDACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGAT AAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTGCCTCATTTTCATTA TCGTACAGATTTCTTATA TAAATACGGTCCCATTATAACTATTACACTCA TGGCTATAATTTTGTA TGG AATCTA AAATACA     ]




>consensus_6761#0
CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCT
AAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTC
AAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGAT
GATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAA
CAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGAT
CCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTC
CCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGA
ATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGA
TCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGG
GATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTC
AGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATA
TTTGTGTTATTTCCTAAACATCGTTTGCTCATTTTCATTATTCGTACAGATTTCTTATAT
TAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTA
TAAATACATGTTC

consensusID : consensus_6761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [TGCGGAAACTGTCCCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGATCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTCAGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAAATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATATTAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTATAAAAACATGTTT]

[-] EMBL CD075416             [TGCGGAAACTGTCCCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGATCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTCAGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAAATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATATTAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTATAAAAACATGTTT]




>consensus_6761#1
TGCGGAAACTGTCCCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAAC
AATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAAC
TAATGTTGTTAGATCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGA
ATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTC
CTTTTTTGGGTTCAGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTT
CAGATAAAGAAAAATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGAC
AGATTTTTTATATTAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTG
TATTGGAAATCTATAAAAACATGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6761#0      CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCT 60
consensus_6761#1      ------------------------------------------------------------
                                                                                  

consensus_6761#0      AAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTC 120
consensus_6761#1      ------------------------------------------------------------
                                                                                  

consensus_6761#0      AAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGAT 180
consensus_6761#1      ------------------------------------------------------------
                                                                                  

consensus_6761#0      GATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAA 240
consensus_6761#1      ------------------------------------------------------------
                                                                                  

consensus_6761#0      CAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGAT 300
consensus_6761#1      ------------------------------------------------------------
                                                                                  

consensus_6761#0      CCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTC 360
consensus_6761#1      -----------------------------------------------TGCGGAAACTGTC 13
                                                                     *************

consensus_6761#0      CCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGA 420
consensus_6761#1      CCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGA 73
                      ******* ** ******** ************** *************************

consensus_6761#0      ATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGA 480
consensus_6761#1      ATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGA 133
                      ************************************ ***********************

consensus_6761#0      TCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGG 540
consensus_6761#1      TCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGG 193
                      ** * ******************** ******* * *** ********************

consensus_6761#0      GATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTC 600
consensus_6761#1      GATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTC 253
                      *************************** * ********** * ************* ***

consensus_6761#0      AGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATA 660
consensus_6761#1      AGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAA 313
                      *** ************************** ********** ** ********* *** *

consensus_6761#0      TTTGTGTTATTTCCTAAACATCGTTTGCTCATTTTCATTATTCGTACAGATTTCTTATAT 720
consensus_6761#1      ATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATAT 373
                       ***** **************** *** ************** * ******** ******

consensus_6761#0      TAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTA 780
consensus_6761#1      TAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTA 433
                      **** ******** ****** *********** ** ************************

consensus_6761#0      TAAATACATGTTC 793
consensus_6761#1      TAAAAACATGTTT 446
                      **** *******