cluster # 6766

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Schistosoma mansoni
cluster # 6766 cluster # 6766 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6766#0 length = 749 sequences # 3

consensus_6766#1 length = 589 sequences # 1

consensusID : consensus_6766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 749
fasta sequence

                              [CCGGAGGCCATTAATTCGGCACGAGGGAATTTGTGATTGGAATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTTGTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTCATAATAATAATTATATCATCATTTATTTATTTAACACA]

[+] EMBL CD081626             [CCGGAGGCCATTAATTCGGCACGAGGGAATTTGTGATTGGAATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTTGTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTCATAATAATAATTATATCATCATTTATTTATTTAACACA]
[+] EMBL CD093354             [                                        AATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACAAGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATGTCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACCATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGNTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCA                                                                                                                       ]
[-] EMBL CD197134             [                                                                                                                                                                                                                                                                                                                    AACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTAT                                                                                                                ]




>consensus_6766#0
CCGGAGGCCATTAATTCGGCACGAGGGAATTTGTGATTGGAATGTATTTACCTCCTTTGT
TTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTT
ACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAA
AAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATTGAATTAC
TGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAG
ATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACA
ATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATC
TTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTA
TTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGG
GGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGAT
TTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTTGTTTAATGC
CAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTCATAATAATA
ATTATATCATCATTTATTTATTTAACACA

consensusID : consensus_6766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACTGCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATGCAATTATATACAAGTTTTGTTTATCAGGGACCGCCGGTTGCTCATAAAGTCGCGGTTGGTGGTAAACATCGAACAAAGTGAGAACATGTTCAATGGTCATGCGAAAAACTATTGATCATTTGTTGGTTTAATTAATTGGTTCGAAATTTCTATTACTTGAGAAATTAAACGATAGAGTTTTCTTGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAAGAGATATATGAGAATTAATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTATTTATTTATAAAAGACAAATAAACATTAGTGTCGATAGTGATAATAATGATAACAATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGTCTTTACATGGTGTATAAGGGGAATTACCTGGGATAAAAATTACAAATATATAATTACCATTGATACTACATT]

[+] EMBL CD075448             [AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACTGCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATGCAATTATATACAAGTTTTGTTTATCAGGGACCGCCGGTTGCTCATAAAGTCGCGGTTGGTGGTAAACATCGAACAAAGTGAGAACATGTTCAATGGTCATGCGAAAAACTATTGATCATTTGTTGGTTTAATTAATTGGTTCGAAATTTCTATTACTTGAGAAATTAAACGATAGAGTTTTCTTGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAAGAGATATATGAGAATTAATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTATTTATTTATAAAAGACAAATAAACATTAGTGTCGATAGTGATAATAATGATAACAATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGTCTTTACATGGTGTATAAGGGGAATTACCTGGGATAAAAATTACAAATATATAATTACCATTGATACTACATT]




>consensus_6766#1
AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACTGCG
GTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATGCAATTATATACAAGTT
TTGTTTATCAGGGACCGCCGGTTGCTCATAAAGTCGCGGTTGGTGGTAAACATCGAACAA
AGTGAGAACATGTTCAATGGTCATGCGAAAAACTATTGATCATTTGTTGGTTTAATTAAT
TGGTTCGAAATTTCTATTACTTGAGAAATTAAACGATAGAGTTTTCTTGGCTCTATTGGG
TTGTATGGTAACCGCCAAACAACAAAAGAGATATATGAGAATTAATAAAACAAAGCAACA
AAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTATTTATTTATAAAAGACA
AATAAACATTAGTGTCGATAGTGATAATAATGATAACAATACTGACACACAATGACTAGA
AATAATGAACAAAGAAAATAGGGAAAAGGAACGATGTCTTTACATGGTGTATAAGGGGAA
TTACCTGGGATAAAAATTACAAATATATAATTACCATTGATACTACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6766#0      CCGGAGGCCATTAATTCGGCACGAGGGA---ATTTGTGATTGGAATGTAT----TTACCT 53
consensus_6766#1      ---AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACT 57
                          **    *  ***   **   * *    *    **** **  *   *    * * **

consensus_6766#0      CCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGT 113
consensus_6766#1      GCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATG--CAATTATATAC 115
                       *  **       *** **    *** *  * *    ** * * **   **  *  **  

consensus_6766#0      TCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATG 173
consensus_6766#1      AAGTTTTGTTTATCAGGGACCGCCGGTTGCTCA--TAAAGTCGCGGT-TGGTGGTAAACA 172
                         ****   * * *    *      *     *   **  * *   * *   * ****  

consensus_6766#0      ATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATT 233
consensus_6766#1      TCGAACAAAGTGAGAACATGTT-CAATGGT---CATGCGAAAAACTATTGATCATTTGTT 228
                          * *** *** ******** **   **   *** *   *   ***  ***   * **

consensus_6766#0      GAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAA-AGACCGAGCA 292
consensus_6766#1      GGTTTAATTAATTGGTTCGAAATTTCTATT-ACTTGAGAAATTAAACGATAGAGTTTTCT 287
                      *  *** *   *  * * ****  *   ** * **** ***  **   * ***     * 

consensus_6766#0      CAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTG 352
consensus_6766#1      TGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAA---GAGATATATGAGAATTA 344
                               *  ** * * *  *  * *       *   *   ** **  ** *  * * 

consensus_6766#0      ATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGT 412
consensus_6766#1      ATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTAT 404
                      ** * ****   *         **  **  * *   *  * ** *   *  *** * * *

consensus_6766#0      CATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAAC 472
consensus_6766#1      TT---ATTTATAAAAGACAAATAAACATTAGTGTCGA---TAGTGATAATAATGAT-AAC 457
                           ** * *  ** * * *  *  * * ***** *   ** *   *  *** ** ***

consensus_6766#0      AATTTTTAT-TATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTT 531
consensus_6766#1      AATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGT 517
                      ***  * *   *   *   **    ** * ****  ****       *  *   *  * *

consensus_6766#0      TTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGT 591
consensus_6766#1      CTTTACATGGTGTATAAGGGGAATTACC-TGGGATAAAAATTACAAATATATAAT----T 572
                       **     **  *  **  *    * ** *    *   **     * * ***  *    *

consensus_6766#0      TCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTT 651
consensus_6766#1      ACCATTGATACTACATT------------------------------------------- 589
                       * ******     ***                                           

consensus_6766#0      GTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTC 711
consensus_6766#1      ------------------------------------------------------------
                                                                                  

consensus_6766#0      ATAATAATAATTATATCATCATTTATTTATTTAACACA 749
consensus_6766#1      --------------------------------------