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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence
[CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGATAAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGGTGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATATAAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTCTTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGATCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCACGGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGGCTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACATATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGTGCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATTATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCCAGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT]
[+] EMBL CD081633 [CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGATAAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGGTGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATATAAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTCTTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGATCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCACGGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGGCTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACATATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGTGCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATTATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCCAGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT]
[-] EMBL BG930531 [ AACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACCTGCTAGCTGAGGATGCTGTCATCGGCGAAGCCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCAACAAAGTCTGGATCTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCGATTTGAc ]
consensusID : consensus_6767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[TATTGGTATTGTGATCGATGGGGGGTCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTATATAAATATCATAAGTCA]
[+] EMBL BG930455 [TATTGGTATTGTGATCGATGGGGGGTCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTATATAAATATCATAAGTCA]
consensusID : consensus_6767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[TTATATTTCAAGTAGAAAATGAAAAAAATTCAATTCGAGAAGAATTGCGGGCCAAAGGGGGTATTCATGTCCAAAACCGGTTGGGCCCCCCACGCAATGGTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCATTTTGGACCCCCCCTTTAAATTTTCATTATCCCAGGGGGACCTAAATGGTATAATGGATATTATGAGGCAAAAAAATG]
[-] EMBL CD075455 [TTATATTTCAAGTAGAAAATGAAAAAAATTCAATTCGAGAAGAATTGCGGGCCAAAGGGGGTATTCATGTCCAAAACCGGTTGGGCCCCCCACGCAATGGTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCATTTTGGACCCCCCCTTTAAATTTTCATTATCCCAGGGGGACCTAAATGGTATAATGGATATTATGAGGCAAAAAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6767#0 CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGAT 60
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 AAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGG 120
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 TGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATAT 180
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 AAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTC 240
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 TTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGAT 300
consensus_6767#1 -------------------------------TATTGGT--ATTGTGATCGAT-GGGGGGT 26
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 CGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATG 360
consensus_6767#1 CGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATG 86
consensus_6767#2 -----------TTATATTTCA---AGTAGAAAATGAAAAAAATTCAATTCGAGAA----G 42
* * ** ** ***** * * ***** * * * * *
consensus_6767#0 AATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAG-CTGAGGATGCTGTC 419
consensus_6767#1 AATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAG-CTGAGGATGCTGTC 145
consensus_6767#2 AATTGCGGGCCAAAGGGGGTATTC---ATGTCCAAAACCGGTTGGGCCCCCCACGCAATG 99
*** * **** *** * ** * ** * ** * * * * * ** *
consensus_6767#0 ATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCT 479
consensus_6767#1 ATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCT 205
consensus_6767#2 GTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCAT---TTTGGACCC 156
* * * ** * * ** * * * * *** ** * *
consensus_6767#0 ACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTA 539
consensus_6767#1 ACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTA 265
consensus_6767#2 CCCCTTTAAATTTTCATTATCCCAGGGG--GACCTAAATGGTATAATGGATATTATGAGG 214
* * ** ** * ** * * ** *** * * **** * *
consensus_6767#0 TATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCAC 599
consensus_6767#1 TATAAATATCATAAGTCA------------------------------------------ 283
consensus_6767#2 CAAAAAAATG-------------------------------------------------- 224
* *** **
consensus_6767#0 GGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGG 659
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 CTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACAT 719
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 ATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGT 779
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 GCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATT 839
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 ATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCC 899
consensus_6767#1 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#0 AGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT 943
consensus_6767#1 --------------------------------------------
consensus_6767#2 --------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||