cluster # 6774

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Schistosoma mansoni
cluster # 6774 cluster # 6774 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6774#0 length = 974 sequences # 2

consensus_6774#1 length = 632 sequences # 2

consensusID : consensus_6774#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 974
fasta sequence

                              [NCGGAGCCTTTAATTCGGCACCAGGTGATAAATTGAAGTCATGGCTTAGCATTTTGACTATATTGATCCCGGATTGAGCATAATTGGTTTAAGACTTCCAAGTTCAAGCCATTTGGTTTGGCATCTAATATCAAATGATTTCTGCAAATGTTTTTGTTGTATTAACTATTATTGTAGTTCTTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTGGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAAGCTGGTCAACGGGGTTTGTTAGCAATAATTAAGAAGACACGATTCAAAGAATTATTACTATCTGAGATTTTTCATCGAAACCTGNGTAAAGGTGCTTATCTAGGTCATATGTATCACTTACTCGCTCATTTANGAGCCGGAACTTTGAATTCGGTTCAAACTAGCTCTGGTTTGCTTATCAGATTGTAACGCTTCAAGACANAATGATTAAANTTGTACGACAGATCCGACTGGTTCTACTTTGACTTTCTAAGGAATAAAC-TCACTGTTTCAGTTTCCACTTTTGCTAT-ATATACCAATC]

[+] EMBL CD081809             [NCGGAGCCTTTAATTCGGCACCAGGTGATAAATTGAAGTCATGGCTTAGCATTTTGACTATATTGATCCCGGATTGAGCATAATTGGTTTAAGACTTCCAAGTTCAAGCCATTTGGTTTGGCATCTAATATCAAATGATTTCTGCAAATGTTTTTGTTGTATTAACTATTATTGTAGTTCTTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTGGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAAGCTGGTCAACGGGGTTTGTTAGCAATAATTAAGAAGACACGATTCAAAGAATTATTACTATCTGAGATTTTTCATCGAAACCTGNGTAAAGGTGCTTATCTAGGTCATATGTATCACTTACTCGCTCATTTANGAGCCGGAACTTTGAATTCGGTTCAAACTAGCTCTGGTTTGCTTATCAGATTGTAACGCTTCAAGACANAATGATTAAANTTGTACGACAGATCCGACTGGTTCTACTTTGACTTTCTAAGGAATAAAC TCACTGTTTCAGTTTCCACTTTTGCTAT ATATACCAAT ]
[-] EMBL CD075540             [                                                                                                                                                                                                       CTGATCGTG TACCAGCCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTGGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAAGCTGGTCAACGGGGTTTGTTAGCAATAATTAAGAAGACACGATTCAAAGAATTATTACTATCTGAGATTTTTCATCGAAACCTGGGTAAAGGTGCTTATCTAGGTCATATGTATCACTTACTCGCTCATTTAGGAGCCGGAACTTTGAATTCGGTTCAAACTAGCTCTGGTTTGCTTATCAGATTGTAACGCTTCAAGACAAAATGATTAAATTTGTACGACAGATCCGACTGGTTCTACTTTGACTTTCTAAGGAATTAACTTCACTGTTTCAGTTTCCACTTTTGGTATAATATACAAATC]




>consensus_6774#0
NCGGAGCCTTTAATTCGGCACCAGGTGATAAATTGAAGTCATGGCTTAGCATTTTGACTA
TATTGATCCCGGATTGAGCATAATTGGTTTAAGACTTCCAAGTTCAAGCCATTTGGTTTG
GCATCTAATATCAAATGATTTCTGCAAATGTTTTTGTTGTATTAACTATTATTGTAGTTC
TTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCC
AGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCT
TCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTT
GTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATA
CGTTTATTAAACATAGACGACCAAATTGATGATTCGAGATTTTTCTGTTGATGACTCAAA
GATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAA
ACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGC
TCTAACCATCAAATCCGAGAATAGTTGGTACATTTCCACCCCATATCTTGGCGCATTTAT
TCGTGCCTACAAAGCTGGTCAACGGGGTTTGTTAGCAATAATTAAGAAGACACGATTCAA
AGAATTATTACTATCTGAGATTTTTCATCGAAACCTGNGTAAAGGTGCTTATCTAGGTCA
TATGTATCACTTACTCGCTCATTTANGAGCCGGAACTTTGAATTCGGTTCAAACTAGCTC
TGGTTTGCTTATCAGATTGTAACGCTTCAAGACANAATGATTAAANTTGTACGACAGATC
CGACTGGTTCTACTTTGACTTTCTAAGGAATAAACTCACTGTTTCAGTTTCCACTTTTGC
TATATATACCAATC

consensusID : consensus_6774#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [AACACCTTATCCGAATAAGCGGTATCAGCTACATCAGTGAACATTATCAAAGAGAAGCTGAACGTTCACAGAAAGACAAACTTTCTTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCGGTTGGTATAATGAAATCTGATGATTTTGTAAATTCTTTCAGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTTGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAGCTGGTCAACGGGT]

[+] EMBL BF936934             [AACACCTTATCCGAATAAGCGGTATCAGCTACATCAGTGAACATTATCAAAGAGAAGCTGAACGTTCACAGAAAGACAAACTTTCTTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCGGTTGGTATAATGAAATCTGATGATTTTGTAAATTCTTTCAGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTTGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAGCTGGTCAACGGGT]
[+] EMBL CD146721             [                                                                                                                                  GTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTCCGTTGGTATAATGAAATCTGATGATTTTGTAAATTCTTTCAGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAGAATAGTTGGTACATTTCCACCCCATATCTTGGC                                  ]




>consensus_6774#1
AACACCTTATCCGAATAAGCGGTATCAGCTACATCAGTGAACATTATCAAAGAGAAGCTG
AACGTTCACAGAAAGACAAACTTTCTTGATGAAGCGTAAGTTATCTGATCGTGTTACCAG
CCCCCCAAAAGTTATGAAGGTATCCAGTATACCTGTAATGGAAACAGTATGTGATGCTCT
TGAATATCTGTTCAGTCTACATCCTTCTACGAACCCAAAAATTCTTGGCCGCCCAATCGT
TTTGAAGTCACAGTTATACACTCTTGTAAATAATCGGAACAAAGTAGAATCACAGCTGTC
AGATATGCAGACGTCTCAGAAAATACGTTTATTAAACATAGACGACCAAATTGATGATTC
GGTTGGTATAATGAAATCTGATGATTTTGTAAATTCTTTCAGAGATTTTTCTGTTGATGA
CTCAAAGATTTTAGAACGATTTGCGGAATTTACTAGTCAAAAGTATCATTATTTAAGCTT
GTGTAAACGTGTTGCATCGGAGCATTTTTCGGATAATGAGATAAGCATTTTAATACAAAA
TGGAGCTCTAACCATCAAATCCGAGAATAGTTTGTACATTTCCACCCCATATCTTGGCGC
ATTTATTCGTGCCTACAAGCTGGTCAACGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6774#0      NCGGAGCCTTTAATTCGGCACCAGGTGATAAATTGAAGTCATGGCTTAGCATTTTGACTA 60
consensus_6774#1      ------------------------------------------------------------
                                                                                  

consensus_6774#0      TATTGATCCCGGATTGAGCATAATTGGTTTAAGACTTCCAAGTTCAAGCCATTTGGTTTG 120
consensus_6774#1      ---------------------------------AACACCTTATCCGAATAAGCGGTATCA 27
                                                       *   **   * * *   *   *  *  

consensus_6774#0      GCATCTAATATCAAATGATTTCTGCAAATGTTTTTGTTGTATTAACTATTATTGTAGTTC 180
consensus_6774#1      GC-TACATCAGTGAAC-ATTATCAAAGAGAAGCTGAACGTTCACAGAAAGACAAACTTTC 85
                      ** *  *  *   **  ***     * *     *    **    *  *  *      ***

consensus_6774#0      TTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCC 240
consensus_6774#1      TTGATGAAGCGTAAGTTATCTGATCGTGTTACCAGCCCCCCAAAAGTTATGAAGGTATCC 145
                      ************************************************************

consensus_6774#0      AGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCT 300
consensus_6774#1      AGTATACCTGTAATGGAAACAGTATGTGATGCTCTTGAATATCTGTTCAGTCTACATCCT 205
                      ************************************************************

consensus_6774#0      TCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTT 360
consensus_6774#1      TCTACGAACCCAAAAATTCTTGGCCGCCCAATCGTTTTGAAGTCACAGTTATACACTCTT 265
                      ************************************************************

consensus_6774#0      GTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATA 420
consensus_6774#1      GTAAATAATCGGAACAAAGTAGAATCACAGCTGTCAGATATGCAGACGTCTCAGAAAATA 325
                      ************************************************************

consensus_6774#0      CGTTTATTAAACATAGACGACCAAATTGATGATTCG------------------------ 456
consensus_6774#1      CGTTTATTAAACATAGACGACCAAATTGATGATTCGGTTGGTATAATGAAATCTGATGAT 385
                      ************************************                        

consensus_6774#0      -----------------AGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCG 499
consensus_6774#1      TTTGTAAATTCTTTCAGAGATTTTTCTGTTGATGACTCAAAGATTTTAGAACGATTTGCG 445
                                       *******************************************

consensus_6774#0      GAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCAT 559
consensus_6774#1      GAATTTACTAGTCAAAAGTATCATTATTTAAGCTTGTGTAAACGTGTTGCATCGGAGCAT 505
                      ************************************************************

consensus_6774#0      TTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAG 619
consensus_6774#1      TTTTCGGATAATGAGATAAGCATTTTAATACAAAATGGAGCTCTAACCATCAAATCCGAG 565
                      ************************************************************

consensus_6774#0      AATAGTTGGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAAAGCTGGT 679
consensus_6774#1      AATAGTTTGTACATTTCCACCCCATATCTTGGCGCATTTATTCGTGCCTACAA-GCTGGT 624
                      ******* ********************************************* ******

consensus_6774#0      CAACGGGGTTTGTTAGCAATAATTAAGAAGACACGATTCAAAGAATTATTACTATCTGAG 739
consensus_6774#1      CAACGGGT---------------------------------------------------- 632
                      *******                                                     

consensus_6774#0      ATTTTTCATCGAAACCTGNGTAAAGGTGCTTATCTAGGTCATATGTATCACTTACTCGCT 799
consensus_6774#1      ------------------------------------------------------------
                                                                                  

consensus_6774#0      CATTTANGAGCCGGAACTTTGAATTCGGTTCAAACTAGCTCTGGTTTGCTTATCAGATTG 859
consensus_6774#1      ------------------------------------------------------------
                                                                                  

consensus_6774#0      TAACGCTTCAAGACANAATGATTAAANTTGTACGACAGATCCGACTGGTTCTACTTTGAC 919
consensus_6774#1      ------------------------------------------------------------
                                                                                  

consensus_6774#0      TTTCTAAGGAATAAACTCACTGTTTCAGTTTCCACTTTTGCTATATATACCAATC 974
consensus_6774#1      -------------------------------------------------------