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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence
[GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGGAGATTGAAATCCAAACCAGAACAAGAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATACCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCATTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGANGAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAACATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTGAATCTCTGAGATGGGAAGTTTATGAGTATAATGTT]
[+] EMBL CD080139 [GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGGAGATTGAAATCCAAACCAGAACAAGAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATACCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCATTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGANGAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAACATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTGAATCTCTGAGATGGGAAGTTTATGAGTATAATGTT]
[+] EMBL CD191487 [ AAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTG ]
consensusID : consensus_6834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence
[TCGNGCCGAGGCCTTTAAGGAGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGACAAGAAGAAGAAGAAGAAATAAACATAATGTCACATAGTAAGACACCACCATTGAATGCANAGCAGTTACGTAATGGTGAGAAAAAATCANATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGGT]
[+] EMBL CD083151 [TCGNGCCGAGGCCTTTAAGGAGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGACAAGAAGAAGAAGAAGAAATAAACATAATGTCACATAGTAAGACACCACCATTGAATGCANAGCAGTTACGTAATGGTGAGAAAAAATCANATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGG ]
[-] EMBL CD076723 [ TATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGCCAAGAAGAAGAAGAAGAAATAACCATAATGTCCCATAGTAAGCCCCCCCCATTGAATGCAAAGCAGTTACGTAATGGTGAGAAAAAATCAAATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6834#0 GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGG 60
consensus_6834#1 ----------------------------------------TCGNGCCGAGGCCTTTAAGG 20
* * ** * *******
consensus_6834#0 AGATTGAAATCCAAACCAGAACAAG-AAATAAGGATTCTTCTTCTTGGTCTAGATAATGC 119
consensus_6834#1 AGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGC 80
************************* **********************************
consensus_6834#0 AGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCAC 179
consensus_6834#1 AGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCAC 140
************************************************************
consensus_6834#0 TCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATAT 239
consensus_6834#1 TCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATAT 200
************************************************************
consensus_6834#0 TGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTT 299
consensus_6834#1 TGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTT 260
********** **************** ********************************
consensus_6834#0 GATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTT 359
consensus_6834#1 GATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTT 320
************************************************************
consensus_6834#0 GGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACA 419
consensus_6834#1 GGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACA 380
****************************** ************** **************
consensus_6834#0 AGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTAT 479
consensus_6834#1 AGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTAT 440
************************************************************
consensus_6834#0 TAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGA 539
consensus_6834#1 TAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAA 500
********************************************************** *
consensus_6834#0 AGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATA 599
consensus_6834#1 ACCTAT--------TTTCCA---TAATGGACAAG-----AAGAAGAAGAAGAAATAAACA 544
* ** * ** * ** * * ** * *** **** * ** *
consensus_6834#0 CCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCA 659
consensus_6834#1 TAATGTCACATA-GTAAGACACCACCAT-TGAATGCANAGC-AGTTA---------CGTA 592
** * * * * ** * * * ***** *** ** * ** ***** *
consensus_6834#0 TTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGAN 719
consensus_6834#1 ATGGTGAGAAAAAATCANATACTGAT------CATGCCAAAGACGTCCAAGCATAACAAT 646
* ** * ** * *** * ** * * * ** * *** ** *
consensus_6834#0 GAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAAC 779
consensus_6834#1 AAA--CAAGCCTGAATGTCATGTTTGGT-------------------------------- 672
* * ** ** * * **
consensus_6834#0 ATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTG 839
consensus_6834#1 ------------------------------------------------------------
consensus_6834#0 AATCTCTGAGATGGGAAGTTTATGAGTATAATGTT 874
consensus_6834#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||