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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence
[NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGGCATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTAAACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTATAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGTTGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATCAGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATACTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGGGATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACTTACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGAAAAATAATTTATACTACTAAT]
[+] EMBL CD083224 [NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGGCATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTAAACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTATAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGTTGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATCAGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCG ]
[-] EMBL CD192286 [ CTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTTTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAG ]
[-] EMBL CD076795 [ TGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTTTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATACTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGGGATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACTTACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGAAAAATAATTTATACTACTAAT]
consensusID : consensus_6839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATGTATCATGATAATAATATATATATGCATGCATTCGCTATCATTAAAGCTATCTATTTGGCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATACTTCATATATTGACTAATTGNGTAACACAAATCGATGATTATTGAACTAATTAAGGGAATATAATATTACTCANCAATATGCTATTCATTNCACTTNTCTNNCCCANTGTAACTTACCCCCNCCANTATGTGTGTTATTGGTTTTTGGACAGAGGGGTTTTTGGGGGAAATANTTNTCTACT]
[+] EMBL SM955 [ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATGTATCATGATAATAATATATATATGCATGCATTCGCTATCATTAAAGCTATCTATTTGGCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATACTTCATATATTGACTAATTGNGTAACACAAATCGATGATTATTGAACTAATTAAGGGAATATAATATTACTCANCAATATGCTATTCATTNCACTTNTCTNNCCCANTGTAACTTACCCCCNCCANTATGTGTGTTATTGGTTTTTGGACAGAGGGGTTTTTGGGGGAAATANTTNTCTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6839#0 NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGG 60
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 CATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTA 120
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 AACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTA 180
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 TAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGT 240
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 TGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATC 300
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 AGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATC 360
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 CAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGAT 420
consensus_6839#1 ------------------------------------------------------------
consensus_6839#0 CATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATT 480
consensus_6839#1 -----ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATT 55
*************************************** ***************
consensus_6839#0 CAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGA 540
consensus_6839#1 CAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACAT-GTATCATGA 114
************************************************** *********
consensus_6839#0 TAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTA 600
consensus_6839#1 TAATAATATATATATGCAT-GCATTCGCTATCATTAAAGCTATCTATTTGGC-ACTTCTA 172
******************* ******************************** *******
consensus_6839#0 TTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGG 660
consensus_6839#1 TTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGG 232
************************************************** * ******
consensus_6839#0 GGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATA 720
consensus_6839#1 GGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATA 292
**************************************** ******* ***********
consensus_6839#0 CTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGG 780
consensus_6839#1 CTTCATATATTGACTAATT-GNGTAACACAAATCGAT-GATTATTGAACTAATTAA-GGG 349
******************* * *************** ****************** ***
consensus_6839#0 GATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACT 840
consensus_6839#1 AATATAATATTACTCANCAATATGCTATT-CATTNCACTTNTCTNNCCCAN-TGT-AACT 406
********* ***** ************ **** ***** * * **** *** ****
consensus_6839#0 TACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGA 900
consensus_6839#1 TACCCCCNCCANT--ATGTGTGTTATTGGT--TTTTGGACAGAGGGG---TTTTTGGGGG 459
******* * ************ ** ***** **** *** ****** *
consensus_6839#0 AAAATAATTTATACTACTAAT 921
consensus_6839#1 AAATANTTNTCTACT------ 474
*** * * ****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||