cluster # 685

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 685 cluster # 685 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_685#0 length = 319 sequences # 1

consensus_685#1 length = 285 sequences # 1

consensusID : consensus_685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTATATTAATATAAAAATGCTACANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAAAACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGAAAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGGAGGGATCA]

[+] EMBL CD124025             [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTATATTAATATAAAAATGCTACANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAAAACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGAAAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGGAGGGATCA]




>consensus_685#0
AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTATATTAATATAAAAATGCTACA
NTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAAA
ACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGAA
AGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAAA
AAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAG
GCTGAGGTGGGAGGGATCA

consensusID : consensus_685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAATAATTTGCTACATTCAAGGAATAAGTACTACCTAGAAGTCAATGCTTTGAGGCCTGAAAATCTTTAGTTTGGGGATTAAATGCCTTTGAGTCAATCTTCTCTCTGAAAGGTAGATAAGGTACTATACAGAGAGCATACTTTGGATTCTTCAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGCAGGGATCA]

[+] EMBL CD123920             [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAATAATTTGCTACATTCAAGGAATAAGTACTACCTAGAAGTCAATGCTTTGAGGCCTGAAAATCTTTAGTTTGGGGATTAAATGCCTTTGAGTCAATCTTCTCTCTGAAAGGTAGATAAGGTACTATACAGAGAGCATACTTTGGATTCTTCAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGCAGGGATCA]




>consensus_685#1
AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAATAATTTGCTACATT
CAAGGAATAAGTACTACCTAGAAGTCAATGCTTTGAGGCCTGAAAATCTTTAGTTTGGGG
ATTAAATGCCTTTGAGTCAATCTTCTCTCTGAAAGGTAGATAAGGTACTATACAGAGAGC
ATACTTTGGATTCTTCAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACA
CACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGCAGGGATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_685#0      AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCT-ATATTAATATAAAAATGCTAC 59
consensus_685#1      AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAAT---AATTTGCTAC 57
                     ************************************** **** ***   **  ******

consensus_685#0      ANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAA 119
consensus_685#1      ATTC--AAGGAATAA-GTACTACCT---AGAAGTCAATGCTTTG-----AGGCCTGAAAA 106
                     * *   *  *****  *********     ********* ***       * ***  ***

consensus_685#0      AACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGA 179
consensus_685#1      ---TCTTTAGTTTGGGGATTAAA-------TGCCTTTGAG---TCAAT-CTTCTCTCTGA 152
                        **   ** *******  ***       *** ***  *   ***** ***********

consensus_685#0      AAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAA 239
consensus_685#1      AAGGTAGATAAGGTACTATAC------AGAGA-GCATACTTTGGATTCTTCAAAAAAAAA 205
                     ***** ***** ****  ***      * *** ** *  ***    *  * *********

consensus_685#0      AAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGA 299
consensus_685#1      AAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGA 265
                     ************************************************************

consensus_685#0      GGCTGAGGTGGGAGGGATCA 319
consensus_685#1      GGCTGAGGTGGCAGGGATCA 285
                     *********** ********