cluster # 6857

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Schistosoma mansoni
cluster # 6857 cluster # 6857 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6857#0 length = 683 sequences # 3

consensus_6857#1 length = 370 sequences # 1

consensusID : consensus_6857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGATGATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAACGACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAGTGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT]

[+] EMBL CD159199             [TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGATGATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAACGACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAGTGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCANAACGTTGACTAGATCGTAATTTACTTTGNGTAGTTGNTGGAACGGAAGGTGAATTATTGCTCANATTATTCGAACTACTAGAATTGCTTACA                                                                                                               ]
[+] EMBL CD111253             [                                                                                                                                                                                        GGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGA                                                                                           ]
[+] EMBL CD114477             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT]




>consensus_6857#0
TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGAT
GATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAAC
GACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAG
TGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGA
TCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTG
ACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGC
AACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAAT
GTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAA
AACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGC
TCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACC
CGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCA
CTGTTTGAGGCCGTGAACGTGTT

consensusID : consensus_6857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CATTTAGAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG]

[-] EMBL CD077581             [CATTTAGAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG]




>consensus_6857#1
CATTTAGAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTC
GTTTCGATGAATGTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTA
GAGATGACTCAAAACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTT
GTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCT
GTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGAC
TCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCC
TCGTGACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6857#0      TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGAT 60
consensus_6857#1      ------------------------------------------------------------
                                                                                  

consensus_6857#0      GATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAAC 120
consensus_6857#1      ------------------------------------------------------------
                                                                                  

consensus_6857#0      GACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAG 180
consensus_6857#1      ------------------------------------------------------------
                                                                                  

consensus_6857#0      TGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGA 240
consensus_6857#1      ------------------------------------------------------------
                                                                                  

consensus_6857#0      TCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTG 300
consensus_6857#1      ------------------------------------------------------------
                                                                                  

consensus_6857#0      ACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGC 360
consensus_6857#1      ------------------------------------------------CATTTAGAATGC 12
                                                                      ****** *****

consensus_6857#0      AACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAAT 420
consensus_6857#1      AACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAAT 72
                      ************************************************************

consensus_6857#0      GTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAA 480
consensus_6857#1      GTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAA 132
                      ************ ***********************************************

consensus_6857#0      AACGT-------------TGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAA 527
consensus_6857#1      AACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAA 192
                      *****             ******************************************

consensus_6857#0      GGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGAC 587
consensus_6857#1      GGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGAC 252
                      ************************************************************

consensus_6857#0      AGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTA 647
consensus_6857#1      AGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTA 312
                      ************************************************************

consensus_6857#0      ATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT---------------------- 683
consensus_6857#1      ATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG 370
                      ************************************