|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 868 fasta sequence
[CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT]
[+] EMBL CD080268 [CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCC ]
[-] EMBL CD090994 [ GTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTG GATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAA GGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT]
consensusID : consensus_6914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence
[GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC]
[-] EMBL CD115903 [GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCA ]
[+] EMBL CD186647 [ CTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6914#0 ------------------------------------------------------------
consensus_6914#1 GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGG 60
consensus_6914#0 ---------------------------------CTCGNAGGCCAAAAATTCGGC-----A 22
consensus_6914#1 AATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAA 120
** * ** *** * *
consensus_6914#0 CGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 82
consensus_6914#1 AAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 180
*******************************************************
consensus_6914#0 TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 142
consensus_6914#1 TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 240
************************************************************
consensus_6914#0 GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 202
consensus_6914#1 GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 300
************************************************************
consensus_6914#0 ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCG 262
consensus_6914#1 ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCG 360
********************************** ** *** ******************
consensus_6914#0 GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 322
consensus_6914#1 GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 420
************************************************************
consensus_6914#0 GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAAT 382
consensus_6914#1 GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAAT 480
**************************************************** *******
consensus_6914#0 AATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTT 442
consensus_6914#1 TATGGAGCTTGTTTC--------------------------------------------- 495
**************
consensus_6914#0 TTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCT 502
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 GTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTG 562
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 GACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAAT 622
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 AAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGAT 682
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 AAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTT 742
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 ACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCC 802
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 TAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAG 862
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 TTTATT 868
consensus_6914#1 ------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||