cluster # 6920

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Schistosoma mansoni
cluster # 6920 cluster # 6920 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6920#0 length = 661 sequences # 2

consensus_6920#1 length = 638 sequences # 2

consensusID : consensus_6920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 661
fasta sequence

                              [CCTCCGAGGCCAANAATTCGGCACGAGGCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATGTGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTTAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCATATATACTGTTTCTCATTATTATTTCTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATATACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACGATCGACTT]

[+] EMBL CD081391             [CCTCCGAGGCCAANAATTCGGCACGAGGCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATGTGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTTAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCATATATACTGTTTCTCATTATTATTTCTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATATACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACGATCGACTT]
[-] EMBL CD152322             [                                    CCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTCAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCAT                                                                                                                                                        ]




>consensus_6920#0
CCTCCGAGGCCAANAATTCGGCACGAGGCGTATAGACCTATGTTAAGCAAAAACGTGTCA
GCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCA
GTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATG
TGTGTGCATGTGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACA
TCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTA
AAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTT
CTCAGTTATTTTATTCGATTGGTTTTTAAAGAGTTTATTATATTGACGTCGTTCACTTGT
TTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTT
TACCTATGAATTTTTAGGAGCTGCCTCATATATACTGTTTCTCATTATTATTTCTCTCGC
CCACTCGCACATACATTTATATATATATATATATATATATATATATATATATATACATAT
ATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACGATCGACT
T

consensusID : consensus_6920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence

                              [ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTCATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCTCTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTCCAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACATTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGTATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCACTTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCAGTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT]

[-] EMBL CD181611             [ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTCATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCTCTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTCC                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD152243             [                                                                                                                       TCTTAACTAT CAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACATTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGTATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCACTTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCAGTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT]




>consensus_6920#1
ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTC
ATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCT
CTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACT
AACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGG
CTTCCAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTG
TGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATA
GGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACA
TTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGT
ATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCAC
TTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCA
GTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6920#0      ------------------------------------------------------------
consensus_6920#1      ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTC 60
                                                                                  

consensus_6920#0      ----------------------------------------CCTCCGAGGCCAANAATTC- 19
consensus_6920#1      ATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCT 120
                                                              *  * *  * * *   * * 

consensus_6920#0      ----GGCA-CGAGGC----GTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACT 70
consensus_6920#1      CTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACT 180
                            ** * ****    *****************************************

consensus_6920#0      AACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGG 130
consensus_6920#1      AACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGG 240
                      ************************************************************

consensus_6920#0      CTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATG 190
consensus_6920#1      CTTCCAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTG 300
                      ***  **************************************************** **

consensus_6920#0      TGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATA 250
consensus_6920#1      TGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATA 360
                      ****************************** *****************************

consensus_6920#0      GGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACA 310
consensus_6920#1      GGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACA 420
                      ******************************************** ** * * *  *****

consensus_6920#0      TTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTC----GACTGGCTTCTCAGT 366
consensus_6920#1      TTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGT 480
                      ******************* ***** **************     *   ***********

consensus_6920#0      TATTTTATT----CGA--TTGGTTTT--TAAAGAGTT--TATTATATTGACGTCGTTCAC 416
consensus_6920#1      ATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCAC 540
                         * ****    **   ****** *  ***   * *  *** **** ************

consensus_6920#0      TTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTT-CGTTGTTGTAAGATTCAGTCA 475
consensus_6920#1      TTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCA 600
                      ******************* *** ***** ***** ** *** * ***************

consensus_6920#0      GTTTTTACCTATGA-ATTTTTA-GGAGCTGCCTCATATATACTGTTTCTCATTATTATTT 533
consensus_6920#1      GTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT---------------------- 638
                      ******** ***** ** **** ********     **                      

consensus_6920#0      CTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATA 593
consensus_6920#1      ------------------------------------------------------------
                                                                                  

consensus_6920#0      TACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACG 653
consensus_6920#1      ------------------------------------------------------------
                                                                                  

consensus_6920#0      ATCGACTT 661
consensus_6920#1      --------