cluster # 6922

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Schistosoma mansoni
cluster # 6922 cluster # 6922 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6922#0 length = 619 sequences # 1

consensus_6922#1 length = 508 sequences # 3

consensusID : consensus_6922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTTAGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTATTTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTTTTTCGCATT]

[+] EMBL CD081671             [CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTTAGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTATTTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTTTTTCGCATT]




>consensus_6922#0
CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTT
AGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTAT
TTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCA
GTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAA
CTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGT
TCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCG
TGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATC
CTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTG
ATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATC
TAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATT
CACTCTACTTTTTCGCATT

consensusID : consensus_6922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 508
fasta sequence

                              [TAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT--GGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTC--GCCGATTCTGGCC]

[-] EMBL CD201450             [TAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACACTACAAAACTTTCTCTTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAAgcg                ]
[-] EMBL CD084148             [                                                                    ATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT  GGAATTATAAGGAC TGTCCGAACATTGTAACAAG CCTGC AATCAACCTC  GCCGATTCT    ]
[-] EMBL CD084096             [                                                                     TTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT   GGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTCGTGCCGA TCTGGCC]




>consensus_6922#1
TAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAA
CCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAA
TAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCG
AACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTG
TTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAG
TGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTT
TCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCC
ATATCATTAGATGTATTCACTCTGGGATTATAAGGACTTGTCCGAACATTGTAACAAGCC
CTGCAAATCAACCTCGCCGATTCTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6922#0      CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTT 60
consensus_6922#1      ------------------------------------------------------------
                                                                                  

consensus_6922#0      AGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTAT 120
consensus_6922#1      ------------------------------------------------------------
                                                                                  

consensus_6922#0      TTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCA 180
consensus_6922#1      -------------------------------------------TAACACTTCCTACTGCA 17
                                                                 *****************

consensus_6922#0      GTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAA 240
consensus_6922#1      GTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAA 77
                      ************************************************************

consensus_6922#0      CTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGT 300
consensus_6922#1      CTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGT 137
                      ************************************************************

consensus_6922#0      TCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCG 360
consensus_6922#1      TCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCG 197
                      ************************************************************

consensus_6922#0      TGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATC 420
consensus_6922#1      TGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATC 257
                      ************************************************************

consensus_6922#0      CTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTG 480
consensus_6922#1      CTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTG 317
                      ************************************************************

consensus_6922#0      ATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATC 540
consensus_6922#1      ATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATC 377
                      ************************************************************

consensus_6922#0      TAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATT 600
consensus_6922#1      TAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATT 437
                      ************************************************************

consensus_6922#0      CACTCTAC--TTTTTCGCATT--------------------------------------- 619
consensus_6922#1      CACTCTGGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTCGC 497
                      ******    ** *  * * *                                       

consensus_6922#0      -----------
consensus_6922#1      CGATTCTGGCC 508