cluster # 6928

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Schistosoma mansoni
cluster # 6928 cluster # 6928 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6928#0 length = 671 sequences # 1

consensus_6928#1 length = 658 sequences # 3

consensusID : consensus_6928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [AAAGATAGTCATCAACTATATTTTTCACTGTTAGTTTTCATTTACCCATTAACTGTTTCTAAATAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAATACATCTCCCGGTGTAAGTTAANATGAGAAAAAACATTATTACTGGTTGGTGATTTTAGCAGTTTCGTTAAACTGTTCTTTAGAAAGAAGCATATTCAAATTTATTTTCGTTGGTTCTTTTAGTATATCAGTTATCTGGTATCAGTGTAAGGTTTTTGGAGATTGGTGATTTTTTATTAGATCATGAACTGA]

[+] EMBL CD132842             [AAAGATAGTCATCAACTATATTTTTCACTGTTAGTTTTCATTTACCCATTAACTGTTTCTAAATAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAATACATCTCCCGGTGTAAGTTAANATGAGAAAAAACATTATTACTGGTTGGTGATTTTAGCAGTTTCGTTAAACTGTTCTTTAGAAAGAAGCATATTCAAATTTATTTTCGTTGGTTCTTTTAGTATATCAGTTATCTGGTATCAGTGTAAGGTTTTTGGAGATTGGTGATTTTTTATTAGATCATGAACTGA]




>consensus_6928#0
AAAGATAGTCATCAACTATATTTTTCACTGTTAGTTTTCATTTACCCATTAACTGTTTCT
AAATAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGC
TCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACA
GATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCT
CGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAA
TTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATA
TCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTT
GGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAAT
ACATCTCCCGGTGTAAGTTAANATGAGAAAAAACATTATTACTGGTTGGTGATTTTAGCA
GTTTCGTTAAACTGTTCTTTAGAAAGAAGCATATTCAAATTTATTTTCGTTGGTTCTTTT
AGTATATCAGTTATCTGGTATCAGTGTAAGGTTTTTGGAGATTGGTGATTTTTTATTAGA
TCATGAACTGA

consensusID : consensus_6928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 658
fasta sequence

                              [TACTCTTGTGATTTGTTGCATGGCGGTTGATACACATTCTGATAACTTTCATTCAATCAAATCGAAGTATGATGGACTAGTGGATGAAAAGAATAGAATCGAAAAAAAATTATCGGAATTAAGTGAAATACTTCGTCAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAATACATCTCCCGGTAGCTATATTCACGTGTCCATTTCTCGTGGCGACAGTATAATCAATGTGCTTTCCATNTTCGTTGTTGAAACCAGCTGANAATGTCAGTCTAGG]

[+] EMBL AI975450             [TACTCTTGTGATTTGTTGCATGGCGGTTGATACACATTCTGATAACTTTCATTCAATCAAATCGAAGTATGATGGACTAGTGGATGAAAAGAATAGAATCGAAAAAAAATTATCGGAATTAAGTGAAATACTTCGTCAGAATGGCAATGTAGGACTGGATACCCCATTAGTTGATGATGAATGCTACCCGCGCTCTGATATTGATGCGGCTCTTATACGAATAACGCGAAACAATATACGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATCGATCAAATATCACCTAATTCAATAGCGGAACACGCAGATCTAAAAG                                                                                                                                                                                            ]
[+] EMBL CD081989             [                  gagGGCGGTTGAT CACATTCTGATAACTTTCATTCAATCAAATCGAAGTATGATGGACTAGTGGATGAAAAGAATAGAATCGAAAAAAAATTATCGGAATTAAGTGAAATACTTCGTCAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAATACATCTCCCGGTAGCTATATTCACGTGTCCATTTCTCGTGGCGACAGTATAATCAATGTGCTTTCCATNTTCGTTGTTGAAACCAGCTGANAATGTCAGTCTAGG]
[+] EMBL CD134770             [                                                                                                            ATTATCGGAATTAAGTGAAATACTTCGTCAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTCCAGTGAGGATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTACTGTCTTTAGAAATACATCTCCCGGTAGCTATATTCACGTGTCCATTTCTCGTGGCGA                                                             ]




>consensus_6928#1
TACTCTTGTGATTTGTTGCATGGCGGTTGATACACATTCTGATAACTTTCATTCAATCAA
ATCGAAGTATGATGGACTAGTGGATGAAAAGAATAGAATCGAAAAAAAATTATCGGAATT
AAGTGAAATACTTCGTCAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGATGA
AGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATCCG
TTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAAAT
ACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGTTC
CAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTTAA
AATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGATCG
AATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCTAC
TGTCTTTAGAAATACATCTCCCGGTAGCTATATTCACGTGTCCATTTCTCGTGGCGACAG
TATAATCAATGTGCTTTCCATNTTCGTTGTTGAAACCAGCTGANAATGTCAGTCTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6928#0      ------------------------------------------------------------
consensus_6928#1      TACTCTTGTGATTTGTTGCATGGCGGTTGATACACATTCTGATAACTTTCATTCAATCAA 60
                                                                                  

consensus_6928#0      ---------------AAAGATAGTCATCAACTATATTTTTCACTGTTAGTTTTCATTTAC 45
consensus_6928#1      ATCGAAGTATGATGGACTAGTGGATGAAAAGAATAGAATCGAAAAAAAATTATCGGAATT 120
                                     *    * *     **  ***   *  *     * ** **      

consensus_6928#0      CCATTAACTGTTTCTAAATAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGAT 105
consensus_6928#1      AAGTGAAATACTTC--GTCAGAATGGCAATGTTGGACTGGATACCCCATTAGTTGATGAT 178
                         * ** *  ***     *****************************************

consensus_6928#0      GAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATC 165
consensus_6928#1      GAAGGCTACCCGCGCTCTGATATTGATGTGGCTCTTATACGAATAACGCGAAACAATATC 238
                      ************************************************************

consensus_6928#0      CGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAA 225
consensus_6928#1      CGTTGTTTAAATACAGATCACAAACAAATAATGCTTGAATTGGAAAGTGTTTTACATAAA 298
                      ************************************************************

consensus_6928#0      ATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGT 285
consensus_6928#1      ATACATGAATATGCTCGTCAAAATCCATCTAAAAATGTTTTGACTGATGGAAATGCATGT 358
                      ************************************************************

consensus_6928#0      TCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTT 345
consensus_6928#1      TCCAGTGAGAATAAATTAATTGAAGATCAATCTGCACAAATTGTGAAGAAAGCTTTCCTT 418
                      ************************************************************

consensus_6928#0      AAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGAT 405
consensus_6928#1      AAAATTGATCAAATATCACCTAATTCAATAGCGGAACAAGCAGATTTAAAAGTTGGAGAT 478
                      ************************************************************

consensus_6928#0      CGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCT 465
consensus_6928#1      CGAATAATTCAATTTGGCTCAGTATCCGCTGACAATTTCACTTCATTACAAGATATATCT 538
                      ************************************************************

consensus_6928#0      ACTGTCTTTAGAAATACATCTCCCGGTGTAAGTTAANATGAGAAAAAACATTATTACTGG 525
consensus_6928#1      ACTGTCTTTAGAAATACATCTCCCGGT---AGCTA-TATTCACGTGTCCATTTCTCGTGG 594
                      ***************************   ** **  **         ****  *  ***

consensus_6928#0      TTGGTGATTTTAGCAGTTTCGTTAAACTGTTCTTTAGAAAGAAGCATATTCAAATTTATT 585
consensus_6928#1      C-GACAGTATAATCAATGTGCTTTCCATNTTCGTTGTTGAAACCAGCTGANAATGTCAGT 653
                        *    * * * ** * *  **    * *** **    * *         **  * * *

consensus_6928#0      TTCGTTGGTTCTTTTAGTATATCAGTTATCTGGTATCAGTGTAAGGTTTTTGGAGATTGG 645
consensus_6928#1      CTAGG------------------------------------------------------- 658
                       * *                                                        

consensus_6928#0      TGATTTTTTATTAGATCATGAACTGA 671
consensus_6928#1      --------------------------