cluster # 6939

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Schistosoma mansoni
cluster # 6939 cluster # 6939 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6939#0 length = 564 sequences # 3

consensus_6939#1 length = 111 sequences # 1

consensusID : consensus_6939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 564
fasta sequence

                              [ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCTATCCTTTCAGTAGTTTATAAAGATTT]

[-] EMBL CD178964             [ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTT                                                                  ]
[+] EMBL CD083347             [                      AAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGCAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCT                          ]
[-] EMBL AI975444             [                                                                                                                                                                                              CGGTAACATCCAGAAATTTAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCTTGAAGATGTCAGGGAACATTTTGTTGACTTTTTCAATGGTTCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTCCCATGACGGTGAAGTCATACGCTCTTTAGCCCAATAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTTAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTAACTTCTGCCCTTCATATTTTTATTCATAAATATTTATCTATCCTTTCAGTAGTTTATAAAGATTT]




>consensus_6939#0
ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCA
TGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCT
CAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGA
GCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATAT
TTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAA
TCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGA
AGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTG
GGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCC
ATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCTAT
CCTTTCAGTAGTTTATAAAGATTT

consensusID : consensus_6939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence

                              [ATCTCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTCAATTAGTCCTAT]

[+] EMBL CD141953             [ATCTCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTCAATTAGTCCTAT]




>consensus_6939#1
ATCTCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAAT
GCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTCAATTAGTCCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6939#0      ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCA 60
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCT 120
consensus_6939#1      ------ATCT-CTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCT 53
                            * *  *************************************************

consensus_6939#0      CAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGA 180
consensus_6939#1      CAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTC---------AATTA 104
                      **************************************    *            *** *

consensus_6939#0      GCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATAT 240
consensus_6939#1      GTCCTAT----------------------------------------------------- 111
                      *   ***                                                     

consensus_6939#0      TTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAA 300
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGA 360
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      AGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTG 420
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      GGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCC 480
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      ATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCTAT 540
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      CCTTTCAGTAGTTTATAAAGATTT 564
consensus_6939#1      ------------------------