cluster # 6969

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Schistosoma mansoni
cluster # 6969 cluster # 6969 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6969#0 length = 421 sequences # 3

consensus_6969#1 length = 410 sequences # 1

consensusID : consensus_6969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 421
fasta sequence

                              [TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA]

[+] EMBL CD135322             [TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTGGCATGTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCCCAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAA                                                                                                                                                                   ]
[+] EMBL CD156545             [               CATATTATGCGTATATATATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA]
[-] EMBL BG931633             [                                                                                        ATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGAC ]




>consensus_6969#0
TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTTGTTGAGTATTCACT
GGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCT
GTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCC
AAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAG
TTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCA
GCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCT
GTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGAC
A

consensusID : consensus_6969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCGCTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACCATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCTATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTGAGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGTCGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA]

[+] EMBL CD156555             [ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCGCTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACCATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCTATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTGAGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGTCGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA]




>consensus_6969#1
ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCGCTGTACTCTAACTGC
AATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACCATATGGCGTACTTGA
ACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCTATCCTAACTATCACT
CTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTGAGAGTTTGATACATT
TCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGTCGGATCTCATCCATA
ATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATGTTCTGTTTATCATCC
TTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6969#0      TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTT--GTTGAGTATTCA 58
consensus_6969#1      ---------------ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCG 45
                                       ******** * *** ***** ********   *  ******* 

consensus_6969#0      CTGG--CCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGC 116
consensus_6969#1      CTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACC 105
                      ***    *  * *******  * **** * ********* ** *  **   **  *** *

consensus_6969#0      ATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCT 176
consensus_6969#1      ATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCT 165
                      ** ** ******* * ** ** * ** *****  ***** * *** **************

consensus_6969#0      AGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAA 236
consensus_6969#1      ATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTG 225
                      * ** * ** ****************** * * ********** * ****** *****  

consensus_6969#0      AGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGT 296
consensus_6969#1      AGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGT 285
                      ******* ***** *********************************** ***** ****

consensus_6969#0      CGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATG 356
consensus_6969#1      CGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATG 345
                      ** * ** *********** * ******************** *****************

consensus_6969#0      TTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCT 416
consensus_6969#1      TTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCT 405
                      ************************************************************

consensus_6969#0      GGACA 421
consensus_6969#1      GGACA 410
                      *****