cluster # 6975

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Schistosoma mansoni
cluster # 6975 cluster # 6975 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6975#0 length = 709 sequences # 2

consensus_6975#1 length = 430 sequences # 2

consensusID : consensus_6975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence

                              [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTATCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATACCATAACTGTGAATGCAGAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAACTC]

[+] EMBL BF936742             [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTATCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATACCATAACTGTGAATGCAGAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAACTC]
[+] EMBL AI975239             [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATG AAGTGGACCGAA TCACATCACC                                                                                                                                               ]




>consensus_6975#0
CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGG
TAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATA
ACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAA
GAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAA
AACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATG
CAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATA
TTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCA
AGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTA
TCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAA
TGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTATCTGGACGAAG
ATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATACCATAACTGTG
AATGCAGAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAACTC

consensusID : consensus_6975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence

                              [CCAACGNATGTCGAATAGGTAGGTGGATCGAGTTCATATCATAATCGATATTTTCCATCACGATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCCTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACTCTAC]

[+] EMBL CD127425             [CCAACGNATGTCGAATAGGTAGGTGGATCGAGTTCATATCATAATCGATATTTTCCATCACGATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCCTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACT    ]
[-] EMBL CD127655             [                                                              ATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCTTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACTCTAC]




>consensus_6975#1
CCAACGNATGTCGAATAGGTAGGTGGATCGAGTTCATATCATAATCGATATTTTCCATCA
CGATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGT
ATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCA
CGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGT
GTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCA
CAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGT
ATCCTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGC
GTTACTCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6975#0      CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGG 60
consensus_6975#1      ------------------------------------------------------------
                                                                                  

consensus_6975#0      TAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATA 120
consensus_6975#1      ------------------------------------------------------------
                                                                                  

consensus_6975#0      ACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAA 180
consensus_6975#1      ------------------------------------------------------------
                                                                                  

consensus_6975#0      GAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAA 240
consensus_6975#1      ------------------------------------------------------------
                                                                                  

consensus_6975#0      AACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATG 300
consensus_6975#1      ----------------------------CCAACGNATGTCGAA---TAGGTAGGTGGATC 29
                                                    *    *  ** **    * ****    ** 

consensus_6975#0      CAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATA 360
consensus_6975#1      GAGTTCATATCATAATCG---ATATTTTCCATCACGATTTTCTGGACGAAGAAACGGAT- 85
                       ******    * **      ***      *  *  ** * *   *   * ** *  ** 

consensus_6975#0      TTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCA 420
consensus_6975#1      --CATTGA--GTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCA 141
                         *****   ******** ****** ********** **** * * ***  * ** ***

consensus_6975#0      AGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTA 480
consensus_6975#1      AGTAGACCGAATTCACATCAACATC-----------CTTTGT----TTCCACCACGATTA 186
                      ***  **  ***********  ***           * * **    **************

consensus_6975#0      TCTGGACGAAGAAACGGATC-----------TCTCCGGTGACAATGGTCAACGTATATAC 529
consensus_6975#1      TCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTAC 246
                      ********************           * ******** * ***** **** * ***

consensus_6975#0      ATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTA 589
consensus_6975#1      ATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTG 306
                      ****************************************  * ************ ** 

consensus_6975#0      TCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATA 649
consensus_6975#1      TCTGGAGGAAGAAACGGATCA-TTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTAT-CC 364
                      ****** ***** **** *** * ******  * **  ************    ***   

consensus_6975#0      CCATAACTGTGAATGCA---GAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAA 706
consensus_6975#1      TCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTA 424
                       ****** ** **  **   * *  * ** * * ** *  **   * * * *       *

consensus_6975#0      CTC--- 709
consensus_6975#1      CTCTAC 430
                      ***