|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT]
[+] EMBL CD201550 [CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCA ]
[+] EMBL BF936085 [ AGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATTTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT]
consensusID : consensus_6976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 421 fasta sequence
[CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG]
[+] EMBL CD152477 [CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACT ]
[+] EMBL CD195423 [ TGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAGGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6976#0 CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCC 60
consensus_6976#1 ------------------------------CTTTTAA----CTTGCATGTCAATTGAGCC 26
** * * ****************
consensus_6976#0 ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 120
consensus_6976#1 ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 86
************************************************************
consensus_6976#0 ATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATAT 180
consensus_6976#1 ATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATAT 146
*************************** ********************************
consensus_6976#0 AAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCT 240
consensus_6976#1 AAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTC-----TCT 201
******** *************** *** * * * *** ***
consensus_6976#0 AAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCAC 300
consensus_6976#1 ACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGT 261
* * ** * ** ** * * * ** *** * * * * *
consensus_6976#0 TGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGT 360
consensus_6976#1 CAATGT----TTATCAGTAATGAAGTCGTGGATGAAAAT---ATCT--AGCTTTAAC--- 309
** * * ** ** **** * * * *** *** * * * **
consensus_6976#0 TGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGC 420
consensus_6976#1 TAGAAAATTTGATGTTAATGTTTCACTATA-------AACTAATAATTGTTATCATACGC 362
* ** * **** * *** * * *** *** ** ** * ** * **
consensus_6976#0 TT-CCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAG 479
consensus_6976#1 AGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGT-TGGTCTAAAACTACCAAG 421
** * **** * * * * * * *** * *** * ****
consensus_6976#0 ACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTA 539
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 CAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGC 599
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 AAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCC 659
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 ATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT 709
consensus_6976#1 --------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||