cluster # 6981

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Schistosoma mansoni
cluster # 6981 cluster # 6981 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6981#0 length = 366 sequences # 1

consensus_6981#1 length = 334 sequences # 2
consensus_6981#2 length = 109 sequences # 1

consensusID : consensus_6981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGAAAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGTAAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAATAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGATTAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTNTAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAACTGTGGG]

[+] EMBL SM7321               [CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGAAAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGTAAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAATAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGATTAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTNTAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAACTGTGGG]




>consensus_6981#0
CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGA
AAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGT
AAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAA
TAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGAT
TAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTN
TAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAAC
TGTGGG

consensusID : consensus_6981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAATAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGATTAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCA-TCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAGATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA]

[+] EMBL AA566203             [AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAATAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGATTAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCA TCTGGAGATCA                                                                                             ]
[+] EMBL SM527                [                                                                                                                             TAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCATTCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAGATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA]




>consensus_6981#1
AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAATAAAAAACAAGTTGAAAAGGATG
TAAAATATTCAAGGGAAGATAATGTAATTAAAGTGATTAATGAATACTCATAAACATAAT
TAAAGTAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAAT
AATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCATCTGGAGATC
AAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAGATTGATCAANTTTGTAATAAAAC
CTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA

consensusID : consensus_6981#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTACCTCATCATAATCTGTTTTTTTATCAAGATAATTCTTTCCATTGT]

[+] EMBL AI977358             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTACCTCATCATAATCTGTTTTTTTATCAAGATAATTCTTTCCATTGT]




>consensus_6981#2
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTATTT
TTTACCTCATCATAATCTGTTTTTTTATCAAGATAATTCTTTCCATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6981#0      CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGA 60
consensus_6981#1      ------------------------------------------------------------
consensus_6981#2      ------------------------------------------------------------
                                                                                  

consensus_6981#0      AAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGT 120
consensus_6981#1      ------------------------------------------------------------
consensus_6981#2      ------------------------------------------------------------
                                                                                  

consensus_6981#0      AAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAA 180
consensus_6981#1      -----------------------AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAA 37
consensus_6981#2      ------------------------------------------------------------
                                                                                  

consensus_6981#0      TAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGAT 240
consensus_6981#1      TAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGAT 97
consensus_6981#2      ------------------------------------------------------------
                                                                                  

consensus_6981#0      TAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTN 300
consensus_6981#1      TAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATA 157
consensus_6981#2      -------TACGCAGTACGGTAATGCAGCT-----GCATGGCA-TGTTTTTTTTTTTTTTT 47
                             * * **  *   ****  *  *       **   * *  ***  *  *   * 

consensus_6981#0      TAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAAC 360
consensus_6981#1      TAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAAC 217
consensus_6981#2      TTTTTTTTTATTTTTTACCTCATCATAATCTG-TTTTTTTATCAAGATAATTCTTTCCAT 106
                      *  *  ****   *     * ** ****  ** ** * *  * * **   **   *  * 

consensus_6981#0      TGTGGG------------------------------------------------------ 366
consensus_6981#1      TGTTGATCATCCATCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAG 277
consensus_6981#2      TGT--------------------------------------------------------- 109
                      ***                                                         

consensus_6981#0      ---------------------------------------------------------
consensus_6981#1      ATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA 334
consensus_6981#2      ---------------------------------------------------------