cluster # 6995

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Schistosoma mansoni
cluster # 6995 cluster # 6995 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6995#0 length = 622 sequences # 3

consensus_6995#1 length = 465 sequences # 1

consensusID : consensus_6995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 622
fasta sequence

                              [ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTGATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCCCCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC]

[+] EMBL CD095615             [ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTGATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC                                                                                                              ]
[+] EMBL CD162665             [                                                                 ACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAA                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD195049             [                                                                                                                                                                                                                                          CTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCCCCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC]




>consensus_6995#0
ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTG
ATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATT
GTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTA
CGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTT
AACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTT
GTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAA
ACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGC
TGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAAC
TTATCTACATCAAACGAAACACATTGTTGTTCCACATGTATTCCTCATTATAATAACCCA
TCTTTTGTTTCATTCTCCCGCCGCTCCCCTAGCGTCTCAGATACTGTTTTCAAAATTATT
CGTAATGAAGGTATTTTATCTC

consensusID : consensus_6995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCTAATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC]

[-] EMBL CD146733             [CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCTAATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC]




>consensus_6995#1
CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATA
CAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGT
TTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCG
GATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGT
CGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCTAATTTTTGATAGTCTCCCAA
GACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTAC
GTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGC
AGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6995#0      ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTG 60
consensus_6995#1      ------------------------------------------------------------
                                                                                  

consensus_6995#0      ATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATT 120
consensus_6995#1      --------------------CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATT 40
                                          ****************************************

consensus_6995#0      GTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTA 180
consensus_6995#1      GTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTA 100
                      ************************************************************

consensus_6995#0      CGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTT 240
consensus_6995#1      CGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTT 160
                      ************************************************************

consensus_6995#0      AACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTT 300
consensus_6995#1      AACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTT 220
                      ************************************************************

consensus_6995#0      GTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAG--------------------- 339
consensus_6995#1      GTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCT 280
                      ***************************************                     

consensus_6995#0      ------------TCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGA 387
consensus_6995#1      AATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGA 340
                                  ************************************************

consensus_6995#0      CTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTC 447
consensus_6995#1      CTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTC 400
                      ************************************************************

consensus_6995#0      GAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGT 507
consensus_6995#1      GAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGT 460
                      ************************************************************

consensus_6995#0      TGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCC 567
consensus_6995#1      TGTTC------------------------------------------------------- 465
                      *****                                                       

consensus_6995#0      CCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC 622
consensus_6995#1      -------------------------------------------------------