cluster # 7000

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Schistosoma mansoni
cluster # 7000 cluster # 7000 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7000#0 length = 864 sequences # 1

consensus_7000#1 length = 476 sequences # 1
consensus_7000#2 length = 465 sequences # 2

consensusID : consensus_7000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 864
fasta sequence

                              [CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCTGTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCAGTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCTTGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGAGTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGTATGGTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGTGTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTATCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCACTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCAGTATGCTTCAATAGTATTTAATAAACTTTAACANAATGGATATGACAAGGGATAGTAGAACCTACCACAAGCAAAAATCAGATNTGACTATCATNNATTATTCCGAAANAGATAGNTNTTNATAATATCACCATTTGGTTTATCAAGGAAAGAATAGTTGTATTTTT]

[+] EMBL CD082327             [CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCTGTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCAGTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCTTGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGAGTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGTATGGTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGTGTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTATCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCACTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCAGTATGCTTCAATAGTATTTAATAAACTTTAACANAATGGATATGACAAGGGATAGTAGAACCTACCACAAGCAAAAATCAGATNTGACTATCATNNATTATTCCGAAANAGATAGNTNTTNATAATATCACCATTTGGTTTATCAAGGAAAGAATAGTTGTATTTTT]




>consensus_7000#0
CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCT
GTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCA
GTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCT
TGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGC
TAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTAT
ATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGA
GTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGTATGG
TTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGTG
TAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATAA
AAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTAT
CTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCAC
TTTACCTTCATCTCACTTCAACTTATCAAAGGGATCAGTATGCTTCAATAGTATTTAATA
AACTTTAACANAATGGATATGACAAGGGATAGTAGAACCTACCACAAGCAAAAATCAGAT
NTGACTATCATNNATTATTCCGAAANAGATAGNTNTTNATAATATCACCATTTGGTTTAT
CAAGGAAAGAATAGTTGTATTTTT

consensusID : consensus_7000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [AATTTTTTAAATTGGAATATGCCATTACGTATGGTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGTGTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTATCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCACTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAATAAACTTTACCAAAAATGGATATGCCAAGGATAAGTAGACCCTCCCCCAAAGCAAAAATCAAGAGTATGACTATCATAATTTATTCCGGAAAAGATAAGTTTTTTATATAATCCCCATTTGTTTTATCAAGAAAAGATAGTTG]

[-] EMBL CD075926             [AATTTTTTAAATTGGAATATGCCATTACGTATGGTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGTGTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTATCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCACTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAATAAACTTTACCAAAAATGGATATGCCAAGGATAAGTAGACCCTCCCCCAAAGCAAAAATCAAGAGTATGACTATCATAATTTATTCCGGAAAAGATAAGTTTTTTATATAATCCCCATTTGTTTTATCAAGAAAAGATAGTTG]




>consensus_7000#1
AATTTTTTAAATTGGAATATGCCATTACGTATGGTTATGTCTTTCTCGAACCCATATTAA
ATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGTGTAAAAGACGAACGTTATTCTCCCCGA
AAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTGGTTCCTAAT
CAGGTTATTTTTTTTAATCTTATCCAGTTGGTATCTGATGATAGCCCTTGAAATAGAATG
CCCAATTCGATTCATCCTTCAAATCTTGTTTCACTTTCCCTTCATCTCACTTCAATTTAA
TCAAAGGATCAAGTATGCTTCAATAGTATTTAATAAACTTTACCAAAAATGGATATGCCA
AGGATAAGTAGACCCTCCCCCAAAGCAAAAATCAAGAGTATGACTATCATAATTTATTCC
GGAAAAGATAAGTTTTTTATATAATCCCCATTTGTTTTATCAAGAAAAGATAGTTG

consensusID : consensus_7000#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 465
fasta sequence

                              [GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTGTTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACAGCACATATAAGATTGTTTAATTCTGGATTGCCATTTTTATACACAGCACCCAATGCCCCAGCAGTATCTCGAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCTTGACAATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAGTTTGTTCATTTGT]

[+] EMBL CD061738             [GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTGTTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACAGCACATATAAGATTGTTTAATTCTGGATTGCCATTTTTATACACAGCACCCAATGCCCCAGCAGTATCTCGAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCTTGACAATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAGTTTGTTCATTTGT]
[-] EMBL CD193336             [                                                                                                                                                          TCACATGGATCACAAAGAGTTCCAGCACATATAAGATTGTTTAATTTTCGATTGCCATTTTTATACGCAGCACCCAATGCCCCACCAGTATCTCTAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTCACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATGTCg                                                                                                        ]




>consensus_7000#2
GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTGTTCATTCTCTTCATC
AACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTCATAACTGGATCGAAATT
ATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACAGC
ACATATAAGATTGTTTAATTCTGGATTGCCATTTTTATACACAGCACCCAATGCCCCAGC
AGTATCTCGAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTTACTTTGTTCATT
TGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATTTC
ACGGATACCATGAAACTTACTTAAAAGAAATGCTTGACAATCACCAACGCTTGCTATTAC
AACAGAAAATTGAGCTTTGCCATATGCTGAAGTTTGTTCATTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7000#0      CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCT 60
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      GTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCA 120
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      GTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCT 180
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      TGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGC 240
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      TAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTAT 300
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      ATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGA 360
consensus_7000#1      ------------------------------------------------------------
consensus_7000#2      ------------------------------------------------------------
                                                                                  

consensus_7000#0      GTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGT-ATG 419
consensus_7000#1      --------------------------AATTTTTTAAATTGGAATATGCCATTACGT-ATG 33
consensus_7000#2      ---------------GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTG 45
                                                *****  *       *   *     * * *  **

consensus_7000#0      GTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGT 479
consensus_7000#1      GTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGT 93
consensus_7000#2      TTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAA-CAGCTAGT----TGT 100
                       * **    ***   **   *   *****       ** * ***  ****       ***

consensus_7000#0      GTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATA 539
consensus_7000#1      GTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATA 153
consensus_7000#2      GTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCT 160
                      ** * *   * *    * *        *    ** * **  *** * *  * *** *   

consensus_7000#0      AAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTA 599
consensus_7000#1      AAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTA 213
consensus_7000#2      GGATCACAAAGTGTTACAGCACATA-TAAGATTGTTTAATTCTGGATTGCCATTTTTATA 219
                        *  *       **   *  * ** * *  ** **    *     **      **  **

consensus_7000#0      TCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCA 659
consensus_7000#1      TCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCA 273
consensus_7000#2      CACAGCACCCAATGCCCCAGCAGTATCTCGAAAAT--CCCGTACAGGTGGTCCCAGTTCT 277
                                        *  ** **  * **       * * *      **    *** 

consensus_7000#0      CTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCA-GTATGCTTCAATAGTATTTAA 718
consensus_7000#1      CTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAA 333
consensus_7000#2      TTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATAC--AG 335
                       * * *  *   **   ****  * *       *** *  ***      * * **   * 

consensus_7000#0      TAAACTTTAACANAA-TGGATATGACAAGGGATA-GTAGAACCTACCACAA-GCAAAAAT 775
consensus_7000#1      TAAACTTTACCAAAAATGGATATGCCAAGGATAA-GTAGACCCTCCCCCAAAGCAAAAAT 392
consensus_7000#2      ATGTTCTTACCCAAC-CGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCT 394
                            *** *  *   ** ***  ** **      *  * * * *   ** * **   *

consensus_7000#0      CAGA--TNTGACTATCATNNATTATTCCGA-AANAGATA-GNTNTTNATAATATCACCAT 831
consensus_7000#1      CAAGAGTATGACTATCATAATTTATTCCGG-AAAAGATAAGTTTTTTATATAATCCCCAT 451
consensus_7000#2      TGACA--ATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAG 452
                              * ** * *      **** *   *  * **      **   *    *   * 

consensus_7000#0      TTGGTTTATCAAGGAAAGAATAGTTGTATTTTT 864
consensus_7000#1      TTGTTTTATCAAGAAAAGA-TAGTTG------- 476
consensus_7000#2      TTTGTTCATTTGT-------------------- 465
                      **  ** **