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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence
[TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAATTANGTGTCAGGTTGATTGGAGGAGA]
[+] EMBL CD152976 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAATTANGTGTCAGGTTGATTGGAGGAGA]
[-] EMBL CD161250 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTCGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCGCCTGT ]
[-] EMBL CD161280 [TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTCGCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACGTTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATATGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGAGTTTTCCGTCGGATACAAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCG ]
consensusID : consensus_7005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[TGTGGATGGGTGAAGTTTTCCGTCGGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGGTTGAAGTTTTTCCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGTGGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAATAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA]
[-] EMBL AI395554 [TGTGGATGGGTGAAGTTTTCCGTCGGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGTACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCGCCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAAGGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAAATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATACTGGTTGAAGTTTTTCCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGTGGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAATAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7005#0 TGAGCTTGAGGTATATCTGCGTGATGACTCGGAAAGGTACTGCCAAGTTAGATGAACTTC 60
consensus_7005#1 ------------------------------------------------------------
consensus_7005#0 GCAAGATCGAGGGTCAGGTGCAGACTTTTTGGGAGTCAAATAAAGTATTCGAAGCAGACG 120
consensus_7005#1 ------------------------------------------------------------
consensus_7005#0 TTCCTTTGGAAAACAGTGAAACGATTCAAAAATACTTCGTCACTTTCCCTTACCCCTATA 180
consensus_7005#1 ------------------------------------------------------------
consensus_7005#0 TGAATGGAAGACTACATTTGGGCCACACATTTTCCTTATCGAAATGCGA-GTTTTCCGTC 239
consensus_7005#1 ------------------------------------TGTGGATGGGTGAAGTTTTCCGTC 24
* * ** * ** **********
consensus_7005#0 GGATACGAACGACTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGT 299
consensus_7005#1 GGATACGAACGGTTAAAGGGCAAGTTGACTCTATGGCCCTTCGGTCTTCATTGCACCGGT 84
*********** ***********************************************
consensus_7005#0 ACGCCTATCCTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGAGTTCGGTTGTCCG 359
consensus_7005#1 ACGCTTATCTTAGCGTCTGCAGACAAATTGTCACGAGAATGCAAGGGGTTCGGTTGTCCG 144
**** **** ************************************ *************
consensus_7005#0 CCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAA 419
consensus_7005#1 CCTGTTTTTCCACCCGAGGCTTCAGAGCCTTCTGCTGATATTGAGGCAACTCCTGCTCAA 204
************************************************************
consensus_7005#0 GGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAA 479
consensus_7005#1 GGTAAAAGCAAAAAAAGTAAGGCTGTTGCGAAGGCTGGTGGCGCAAAATTTCAGTGGCAA 264
************************************************************
consensus_7005#0 ATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATAC 539
consensus_7005#1 ATAATGGAGAGCCTTGGCATGGAGAACAATGAAATCGCTAAATTTAAAGACCCTGAATAC 324
************************************************************
consensus_7005#0 TGNTTGAAGTTTTTTCCCTGCTTTAGCTGTTGACGACCTGCGAAA-TTANGTGTCA-GGT 597
consensus_7005#1 TGGTTGAAGTTTTT-CCCTGCTTTAGCTGTTGATGACCTGCGAAAATTAGGTGTCAAGGT 383
** *********** ****************** *********** *** ****** ***
consensus_7005#0 TGATTGGAGGAGA----------------------------------------------- 610
consensus_7005#1 GGGTTCTATGTACTCCAGTCGGTCTTATTTAATTATTTTTAATGCTGTGCTTGTAATAAA 443
* ** * *
consensus_7005#0 --------------------------------
consensus_7005#1 TAAAGTTTGTTTTTCTTAAAAAAAAAAAAAAA 475
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||