cluster # 7026

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Schistosoma mansoni
cluster # 7026 cluster # 7026 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7026#0 length = 491 sequences # 2

consensus_7026#1 length = 296 sequences # 2

consensusID : consensus_7026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence

                              [AGCAATAGGTAGGTATTGACACCAGGTTTTTATGTTAATGTGTCTAGTAATAACATGGTATTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGGAAGCATTTATTGGAAACGAAACTTTATGTGATTCAGATGTTAATGTTAATAATATGGTACCTATTGGTGTTGGTATTGCACTAATTGTCTGTATTGTGGTTGCGATTACTGTATTTATTGTTTTCAACAGACGCAATCGTCGTAGTTACACTACACTTTAATTAAATGAGTTCCCTTCATGTACCAATTTATTTTATATAATCTATCGCATTCTTATGTGTTTTTAAGTATTTGCATGTTTGTATGTATGTATGTATGTATGTATGTAGGTGTTTTCCTGCATGAGGATTAA]

[+] EMBL CD127905             [AGCAATAGGTAGGTATTGACACCAGGTTTTTATGTTAATGTGTCTAGTAATAACATGGTATTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGGAAGCATTTATTGGAAACGAAACTTTATGTGATTCAGATGTTAATGTTAATAATATGGTACCTATTGGTGTTGGTATTGCACTAATTGTCTGTATTGTGGTTGCGATTACTGTATTTATTGTTTTCAACAGACGCAATCGTCGTAGTTACACTACACTTTAATTAAATGAGTTCCCTTCATGTACCAATTTATTTTATATAATCTATCGCATTCTTATGTGTTTTTAAGTATTTGCATGTTTGTATGTATGTATGTATGTATGTATGTAGGTGTTTTCCTGCATGAGGATTAA]
[-] EMBL BG930370             [                                                                              TCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGGAAGCATTTATTGGAAACGAAACTTTATGTGATTCAGATGTTAATGTTAATAATATGGTACCTATTGGTGTTGGTATTGCACTAATTGTCTGTATTGTGGTTGCGATTACTGTATTTATTGTTTTCAACAAACGCAATCGTCGTAGTTACACTACACTTTAATTAAATGAcccccc                                                                                                                     ]




>consensus_7026#0
AGCAATAGGTAGGTATTGACACCAGGTTTTTATGTTAATGTGTCTAGTAATAACATGGTA
TTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAG
GGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCA
TTCATGAACAATTCTGTGGAAGCATTTATTGGAAACGAAACTTTATGTGATTCAGATGTT
AATGTTAATAATATGGTACCTATTGGTGTTGGTATTGCACTAATTGTCTGTATTGTGGTT
GCGATTACTGTATTTATTGTTTTCAACAGACGCAATCGTCGTAGTTACACTACACTTTAA
TTAAATGAGTTCCCTTCATGTACCAATTTATTTTATATAATCTATCGCATTCTTATGTGT
TTTTAAGTATTTGCATGTTTGTATGTATGTATGTATGTATGTATGTAGGTGTTTTCCTGC
ATGAGGATTAA

consensusID : consensus_7026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 296
fasta sequence

                              [TCGTATGGAACCAAACAAAACTTCGAATGACGCCACTAACGTGTCATCTATCTATACTTTGGACAGTATAACATTAACTTATTATATGGATAAGAATTTATTTCCGGATTCATTGACACCAGGTCAATATGTTAATGTGTCTAGTAATAATATGGTATTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGG]

[-] EMBL CD195660             [TCGTATGGAACCAAACAAAACTTCGAATGACGCCACTAACGTGTCATCTATCTATACTTTGGACAGTATAACATTAACTTATTATATGGATAAGAATTTATTTCCGGATTCATTGACACCAGGTCAATATGTTAATGTGTCTAGTAATAATATGGTATTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGG]
[-] EMBL CD195808             [                                                                          TAACTTATTATATGGATAAGAATTTATTTCCGGATTCATTGACACCAGGTCAATATGTTAATGTGTCTAGTAATAATATGGTATTTAGAATACCTGTTGGATCATATTATTCATGTTTGACCGTTCCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAACTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGG]




>consensus_7026#1
TCGTATGGAACCAAACAAAACTTCGAATGACGCCACTAACGTGTCATCTATCTATACTTT
GGACAGTATAACATTAACTTATTATATGGATAAGAATTTATTTCCGGATTCATTGACACC
AGGTCAATATGTTAATGTGTCTAGTAATAATATGGTATTTAGAATACCTGTTGGATCATA
TTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAA
CTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7026#0      ------------------------------------------------------------
consensus_7026#1      TCGTATGGAACCAAACAAAACTTCGAATGACGCCACTAACGTGTCATCTATCTATACTTT 60
                                                                                  

consensus_7026#0      -----------------------------------AGCAATAGGTAGGT--ATTGACACC 23
consensus_7026#1      GGACAGTATAACATTAACTTATTATATGGATAAGAATTTATTTCCGGATTCATTGACACC 120
                                                         *   **     * *  *********

consensus_7026#0      AGGTTTTTATGTTAATGTGTCTAGTAATAACATGGTATTTAGAATACCTGTTGGATCATA 83
consensus_7026#1      AGGTCAATATGTTAATGTGTCTAGTAATAATATGGTATTTAGAATACCTGTTGGATCATA 180
                      ****   *********************** *****************************

consensus_7026#0      TTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAA 143
consensus_7026#1      TTATTCATGTTTGACCGTACCGGAAATTACCCTAAAGGGAAATGAAAAAATCCCTAACAA 240
                      ************************************************************

consensus_7026#0      CTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGGAAGC 203
consensus_7026#1      CTGCAAGTTATTCATGAAGAATTTGAAAGTAGAAGCATTCATGAACAATTCTGTGG---- 296
                      ********************************************************    

consensus_7026#0      ATTTATTGGAAACGAAACTTTATGTGATTCAGATGTTAATGTTAATAATATGGTACCTAT 263
consensus_7026#1      ------------------------------------------------------------
                                                                                  

consensus_7026#0      TGGTGTTGGTATTGCACTAATTGTCTGTATTGTGGTTGCGATTACTGTATTTATTGTTTT 323
consensus_7026#1      ------------------------------------------------------------
                                                                                  

consensus_7026#0      CAACAGACGCAATCGTCGTAGTTACACTACACTTTAATTAAATGAGTTCCCTTCATGTAC 383
consensus_7026#1      ------------------------------------------------------------
                                                                                  

consensus_7026#0      CAATTTATTTTATATAATCTATCGCATTCTTATGTGTTTTTAAGTATTTGCATGTTTGTA 443
consensus_7026#1      ------------------------------------------------------------
                                                                                  

consensus_7026#0      TGTATGTATGTATGTATGTATGTAGGTGTTTTCCTGCATGAGGATTAA 491
consensus_7026#1      ------------------------------------------------