cluster # 7029

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7029 cluster # 7029 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7029#0 length = 781 sequences # 3

consensus_7029#1 length = 333 sequences # 1

consensusID : consensus_7029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 781
fasta sequence

                              [CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAACCGTATTGTTTATGGTATAA-ATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTCTGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATACGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCATAAAGCTTTATTTAACCAACT]

[+] EMBL CD191686             [CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAACCGTATTGTTTATGGTATAA ATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAAT ATGATGAAGAT                                                                                                                                                                                               ]
[-] EMBL CD096643             [                                                                                                                                                                           tgGGTATAANCCAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATT                                                                                                                                                    ]
[+] EMBL CD165396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTCTGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATACGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCATAAAGCTTTATTTAACCAACT]




>consensus_7029#0
CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGA
ACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGATA
TTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAACCGTATTGTTTATGGTATAA
ATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATG
ATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTC
ATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAA
CATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAAT
ATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATG
ATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATA
GTGATGATGATGATGATGTTAATGACAGTGAATCGAATAATGATGAAGATGGTTTTAATC
ATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTCTGAGGACGACATTAACAATA
AAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATACGATAAGAATTTACTACGAC
CAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCATAAAGCTTTATTTAACCAAC
T

consensusID : consensus_7029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGATACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGGTGAGATCCATGTTTTTGTAATTTACCTCCTAGCTCATGAACTGTATATTAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTGAGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG]

[+] EMBL CD156136             [GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGATACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGGTGAGATCCATGTTTTTGTAATTTACCTCCTAGCTCATGAACTGTATATTAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTGAGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG]




>consensus_7029#1
GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGAT
ACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAG
TGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGT
AAAACAAATTTTAGATGGTGAGATCCATGTTTTTGTAATTTACCTCCTAGCTCATGAACT
GTATATTAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTGAGGATTCATAGGAAT
TTTTCAGTTTGAAGTTGATTTTCATCACAAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7029#0      ------------------------------------------------------------
consensus_7029#1      GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGAT 60
                                                                                  

consensus_7029#0      --------------------CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAG 40
consensus_7029#1      ACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAG 120
                                          ****************************************

consensus_7029#0      TGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGT 100
consensus_7029#1      TGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGT 180
                      ************************************************************

consensus_7029#0      AAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAA 160
consensus_7029#1      AAAACAAATTTTAGATGGT--------GAGATCCATGTTTTTGTAATTTACCTCCTAG-- 230
                      ***************** *        ** *** *    *   * ***   *  ** *  

consensus_7029#0      CCGTATTGTTTATGGTATAAATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCA 220
consensus_7029#1      ----CTCATGAACTGTATAT-TAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTG 285
                           *  *  *  *****  ** *  **  **  ** * *    * *   **   *   

consensus_7029#0      ACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATC 280
consensus_7029#1      AGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG------------ 333
                      *  * **** ***  *  * * ***    **  **    *** ****             

consensus_7029#0      GTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGG 340
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAA 400
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      AATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGA 460
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTC 520
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAA 580
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTC 640
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATA 700
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      CGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCA 760
consensus_7029#1      ------------------------------------------------------------
                                                                                  

consensus_7029#0      TAAAGCTTTATTTAACCAACT 781
consensus_7029#1      ---------------------