cluster # 7068

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Schistosoma mansoni
cluster # 7068 cluster # 7068 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7068#0 length = 437 sequences # 3

consensus_7068#1 length = 398 sequences # 1

consensusID : consensus_7068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 437
fasta sequence

                              [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAG-GTG-CTGGCTATGAGATATGTGATGTG-TATGTCAGGGCTAGTG-AG-TAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAATACTAATCTTTATATCTCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTTTTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCCCTAGGATCAAAGGTGTGAAC]

[+] EMBL AI026165             [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAG GTG CTGGCTATGAGATATGTGATGTG TATGTCAGGGCTAGTG AG TAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAATACTAATCTTTATATCTCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTTTTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCCCTAGGATCAAAGGTGTGAAC]
[+] EMBL AI026173             [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAAAGAAAATAAAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTAAATCTGAAAATCAGGGACTAAAA ATA ATGACTATGAGATATGTGATGAGATATGTCAGGGCTAATG AG TAGCTATTTTCCAATGGACTGAGAATGCATNCCCCTAAGGAATACT                                                                                                                                                        ]
[+] EMBL AI740433             [GTTTCTACCAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCCGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGACAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAGTTTGTCTGGCTAAGAGATATGTGATGTG GATGTCAGGGCTAGTGAAGTTAGCTATTTTCCAATGGAC                                                                                                                                                                                   ]




>consensus_7068#0
GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATT
CTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAA
GTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAA
AATCAGGGACTAAAGGTGCTGGCTATGAGATATGTGATGTGTATGTCAGGGCTAGTGAGT
AGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAATACTAATCTTTATATCTCT
CTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTTTTG
TGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCCCTA
GGATCAAAGGTGTGAAC

consensusID : consensus_7068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAACCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGAGTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCCCCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTTTGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC]

[+] EMBL AI740404             [TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAACCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGAGTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCCCCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTTTGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC]




>consensus_7068#1
TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGC
TAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAACCGAAAAT
CTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGG
ACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGAGTAGCCAT
TTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCCCCCCGAGT
GCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTTTGGGGCCT
CCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7068#0      GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATT 60
consensus_7068#1      --------TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATT 52
                              ****************************************************

consensus_7068#0      CTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAA 120
consensus_7068#1      CTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAA 112
                      ************************************************************

consensus_7068#0      GTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAA 180
consensus_7068#1      CCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAA 172
                        ****** ***** *********************************************

consensus_7068#0      AATCAGGGACTAAAGGT-GCTGGCTATGAGATATGTGATGTG-TATGTCAGGGCTAGTGA 238
consensus_7068#1      AATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGA 232
                      *************   * ** ********** ********** *****************

consensus_7068#0      GTAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAA-TACTAATCTTTATATC 297
consensus_7068#1      GTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCC 292
                      ***** *********************************** * ******** **    *

consensus_7068#0      TCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTT 357
consensus_7068#1      CCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTT 352
                       * * ********************* ********************* * ** ******

consensus_7068#0      TTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCC 417
consensus_7068#1      TGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC-------------- 398
                      * * ** ******** ***** *************** * * ***               

consensus_7068#0      CTAGGATCAAAGGTGTGAAC 437
consensus_7068#1      --------------------