cluster # 7104

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Schistosoma mansoni
cluster # 7104 cluster # 7104 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7104#0 length = 421 sequences # 3

consensus_7104#1 length = 391 sequences # 1

consensusID : consensus_7104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 421
fasta sequence

                              [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT]

[+] EMBL CD111070             [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGCTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT]
[+] EMBL CD111002             [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT]
[+] EMBL CD098399             [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAACTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCCTGTGTTATT]




>consensus_7104#0
AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAG
GAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAG
CGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGT
CGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAA
TGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAAT
ACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACAC
GGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTAT
T

consensusID : consensus_7104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAATGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAATACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATTGATCAGTTACAATGCTGGTTTCCTTTAGGGTT]

[+] EMBL CD111612             [AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAATGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAATACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATTGATCAGTTACAATGCTGGTTTCCTTTAGGGTT]




>consensus_7104#1
AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAGG
AATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGC
GGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGTC
GTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAAT
GACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAATA
CTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATTG
ATCAGTTACAATGCTGGTTTCCTTTAGGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7104#0      AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAG 60
consensus_7104#1      -AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAG 59
                       *********************************** ***********************

consensus_7104#0      GAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAG 120
consensus_7104#1      GAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAG 119
                      ************************************************************

consensus_7104#0      CGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGT 180
consensus_7104#1      CGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGT 179
                      ******************************* ****************************

consensus_7104#0      CGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAA 240
consensus_7104#1      CGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAA 239
                      ******************************************** ***************

consensus_7104#0      TGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAAT 300
consensus_7104#1      TGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAAT 299
                      ******************** ******************************  *******

consensus_7104#0      ACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACAC 360
consensus_7104#1      ACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATT 359
                      ************************* *************** *********** *     

consensus_7104#0      GG-CAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTA 419
consensus_7104#1      GATCAGTTACAATGCTGGTTTCCTTTAGGGTT---------------------------- 391
                      *  ** ***   *  *       ** **  *                             

consensus_7104#0      TT 421
consensus_7104#1      --