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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[GTCATTCCCCTTCCACTGAATCATTTCTTTTTACAATGGCGTTCTGAGATGACCAACTTTATTAAGAAATGCTCCACGAACCATTCTAGAATTGAGAAGAGCCTCCCGAGCTACCTATATGTGCACCTTGCTTTGTGGCTAGGAAATGGTACACAGACCCCATTTCCTCCACTTCCCGCGGTCGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAATCTATTGAAGAATGTTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATTGGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGATTATCAATATTATTACTATTATAATAGTGATCAGACATATGAAAAATTTCCATTATCAGCCACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACAATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGT]
[+] EMBL CD123224 [GTCATTCCCCTTCCACTGAATCATTTCTTTTTACAATGGCGTTCTGAGATGACCAACTTTATTAAGAAATGCTCCACGAACCATTCTAGAATTGAGAAGAGCCTCCCGAGCTACCTATATGTGCACCTTGCTTTGTGGCTAGGAAATGGTACACAGACCCCATTTCCTCCACTTCCCGCGGTCGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAATCTATTGAAGAATGTTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATTGGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGATTATCAATATTATTACTATTATAATAGTGATCAGACATATGAAAAATTTCCATTATCAGCCACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACAATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGT]
consensusID : consensus_7109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 570 fasta sequence
[TTAAACAAGTTACATTCAGTGAAACGGTTAAATTTGTTTCAACTGAAGACTTTATTAAGAAAGTTACAATGAAGTCATCTGTAAATGTGAATCGATCAGTGACACCGGAAATACTGCCATCGCCAATGGTAAGAGGAATATCAACACAAACACCATTACCACCACAAACAACAGTAGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAGTCTATTGAAGAATGTTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATTGGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGATTATCAATATTATTACTATTATAATAGTGATCAGAAATATGAAAAATTTCCATTATCAGCCACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACAATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGTACG]
[+] EMBL CD123233 [TTAAACAAGTTACATTCAGTGAAACGGTTAAATTTGTTTCAACTGAAGACTTTATTAAGAAAGTTACAATGAAGTCATCTGTAAATGTGAATCGATCAGCGACACCGGAAATACTGCCATCGCCAATGGTAAGAGGAATATCAACACAAACACCATTACCACCACAAACAACAGTAGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAGTCTATTGAAGAATGTTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATTGGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGATTATCAATATTATTACTATTATAATAGTGATCAGAAATATGAAAAATTTCCATTATCAGCCACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACAATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGTACG]
[-] EMBL CD196172 [ ACTTGTTTACGAAAGTTACAATGAAGTCATCTGTAAATGTGAATCGATCAGTGACACCGGAAATACTGCCATCGCCAATGGTAAGAGGAATATCAACACAAACACCATTACCACCACAAACAACAGTAGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAGTCTATTGAAGAATGTTCCTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATT GCACAGCATACGTTAAATAATCATTCTAGACCTAC ]
[-] EMBL CD139864 [ tTTACAATGAAGTCATCTGTAAATGTGAATCGATCAGTGACACCGGAAATACTGCCATCGCCAATGGTAAGAGGAATATCAACACAAACACCATTACCACCACAAACAACAGTAGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCCTGTTATTGTATCAAATGAAAAAAACAATGTCGAATTCTTTCTTCAGTCTATTGAAGAATGTTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATTGGCACAGCATACATTTAGT GTCATTCTAGt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7109#0 ---GTCATTCCCCTTCCACTGAATCATTTCTTTTTACAATGGCGTTCTGAGATGACCAAC 57
consensus_7109#1 TTAAACAAGTTACATTCAGTGAAACGGTTAAATTTG---------TTTCAACTGAA-GAC 50
** * * ** **** * ** *** * * * *** **
consensus_7109#0 TTTATTAAGAAATGCTCCACGAACCATTCTAGAATTGAGAAGAGCCTCCCGA-GCTACCT 116
consensus_7109#1 TTTATTAAGAAAGTTACAATGAAGTCATCTGTAAATGTGAATCGATCAGTGACACCGGAA 110
************ * * *** *** ** ** *** * ** *
consensus_7109#0 ATATGTGCACCTTGCTTTGTGGCTAGGAAATGGTACACAGACCCCATTTCCTCCACTTCC 176
consensus_7109#1 ATACTGCCATCGCCAATGGTAAGAGGAATATCA-ACACAAACACCATTACCACCACAAAC 169
*** ** * * ** * * ** ***** ** ***** ** **** *
consensus_7109#0 CGCGGTCGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCC 236
consensus_7109#1 AACAGTAGTTAATACTAATACTACTAATGCTACTATTACTACGAATATTCCTGAAAGTCC 229
* ** *****************************************************
consensus_7109#0 TGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAATCTATTGAAGAATG 296
consensus_7109#1 TGTTATTGTATCAAATGAAAAAAACAATGACGAATTCTTTCTTCAGTCTATTGAAGAATG 289
********************************************* **************
consensus_7109#0 TTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATT 356
consensus_7109#1 TTCTTCTGAAGGGAAAACCGAGACTCTACTAACCAAATCAACTTCATGCCCTAATCAATT 349
************************************************************
consensus_7109#0 GGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGA 416
consensus_7109#1 GGCACAGCATACGTTAAATAATCATTCTAGACCTACATCATTATTTGAAAAGGATTCCGA 409
************************************************************
consensus_7109#0 TTATCAATATTATTACTATTATAATAGTGATCAGACATATGAAAAATTTCCATTATCAGC 476
consensus_7109#1 TTATCAATATTATTACTATTATAATAGTGATCAGAAATATGAAAAATTTCCATTATCAGC 469
*********************************** ************************
consensus_7109#0 CACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACA 536
consensus_7109#1 CACCGTATTATTAGCTATACCTGAAGGTGGTGAAAATGACTACTATGCTGATTCACCACA 529
************************************************************
consensus_7109#0 ATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGT--- 574
consensus_7109#1 ATGTATAACAGTTAAAGAACTGAAAGAATTANGTTTGTACG 570
**************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||