cluster # 7178

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Schistosoma mansoni
cluster # 7178 cluster # 7178 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7178#0 length = 386 sequences # 2

consensus_7178#1 length = 287 sequences # 2

consensusID : consensus_7178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 386
fasta sequence

                              [GCTTGACAATCTTCTATGTTATTCATTTGCTTGCAATATTTTCTGACAGTACTGAATGGGTTATCACATGTAACAAAACAACTTGTTGTGACGAAGACAAAAACTCAAAAATATGTTGTGTGGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATTTCGATTTATACAGGAGAAAGATTGGGATGGCTAATAAACTAGGAGAGATACTAAAAAAACTAAATAGTCCTTGAAGATAATTTGG-TCAACATGCAGTACGATTATTAACATATGCGAAAT-AGCTTGATTTCTGAAGTGATCTTCAACTTTCCTAATGTTAGAGAATAATGGTGTTTGTAATTGGTTCGTGTTTTAATAATAAACCAAACTTG]

[+] EMBL AI764791             [GCTTGACAATCTTCTATGTTATTCATTTGCTTGCAATATTTTCTGACAGTACTGAATGGGTTATCACATGTAACAAAACAACTTGTTGTGACGAAGACAAAAACTCAAAAATATGTTGTGTGGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATTTCGATTTATACAGGAGAAAGATTGGGATGGCTAATAAACTAGGAGAGATACTAAAAAAACTAAATAGTCCTTGAAGATAATTTGG TCAACATGCAGTACGATTATTAACATATGCGAAAT AGCTTGATTTCTGAAGTGATCTTCAACTTTCCTAATGTTAGAGAATAATGGTGTTTGTAATTGGTTCGTGTTTTAATAATAAACCAAACTTG]
[+] EMBL AI764826             [GCTTGGCAATCTTCTATGTTATTCATTTGCTTGCAATATTTTCTGACAGTACTGAATGGGTTATCACATGTAACAAAACAACTTGTTGTGACGAAGACAAAAACTCAAAAATATGTTGTGTGGGTAATGATTGTAAGGATGTCATNAAACCAAGAAGCTCTGGAGCAGATGATTTCGATTTATACAGGAGAAAGATTGGGATGGCTATTAAACTAGGAGAGATACTAAAAAAACTAAATAGTCCTTGAAGATAATTTGGATCACCTTGCRGTACGATTATTACCTTTGGCGAAATAAGCTTGATTTCTGAGGTGATCTTCAACTTTCCTAATGTTAG GGATAATGGTGTTTGTWATTGGTTCcgt                      ]




>consensus_7178#0
GCTTGACAATCTTCTATGTTATTCATTTGCTTGCAATATTTTCTGACAGTACTGAATGGG
TTATCACATGTAACAAAACAACTTGTTGTGACGAAGACAAAAACTCAAAAATATGTTGTG
TGGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATTTCGATT
TATACAGGAGAAAGATTGGGATGGCTAATAAACTAGGAGAGATACTAAAAAAACTAAATA
GTCCTTGAAGATAATTTGGTCAACATGCAGTACGATTATTAACATATGCGAAATAGCTTG
ATTTCTGAAGTGATCTTCAACTTTCCTAATGTTAGAGAATAATGGTGTTTGTAATTGGTT
CGTGTTTTAATAATAAACCAAACTTG

consensusID : consensus_7178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 287
fasta sequence

                              [AAACTCAAAAATATGTTGTGTCGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATCTCAACTTATTCCTGAGAAAGCGTGGAATGGCTTATAAACTAGGAGAGATCCTAAAAATATTAAATTGAAACGATGTAGAGTCCTTGAAGAGAATTCGATCAACATGCAGTACGAATATTAACATATGCGAAATTGCTTGATTTCTAAAGTGATCTTTAACTTTTATAAAGTTAACGAATAATGGTCTTCATAATTTTATTAAATAAACTTAAT]

[+] EMBL AI820450             [AAACTCAAAAATATGTTGTGTCGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATCTCAACTTATTCCTGAGAAAGCGTGGAATGGCTTATAAACTAGGAGAGATCCTAAAAATATTAAATTGAAACGATGTAGAGTCCTTGAAGAGAATTCGATCAACATGCAGTACGAATATTAACATATGCGAAATTGCTTGATTTCTAAAGTGATCTTTAACTTTTATAAAGTTAACGAATAATGGTCTTCATAATTTTATTAAATAAACTTAAT]
[+] EMBL AI740323             [AAACTCAAAAATATGTTGTGTCGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATCTCAACTTATTCCTGAGAAAGCGTGGAATGGCTTATAAACTAGGAGAGATCCTAAAAAAATTAAATTGAAACGATGTAGAGTCCTTGAAGAGAATTCGATCAACATGCAGTACGAATATTAACATATGCGAAATTGCTTGATTTCTAAAGTGATCTTTAACTTTTATAAAGTTAACGAATAATGGTCTTCATAATTTTATT AATAAACTTAA ]




>consensus_7178#1
AAACTCAAAAATATGTTGTGTCGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTC
TGGAGCAGATGATCTCAACTTATTCCTGAGAAAGCGTGGAATGGCTTATAAACTAGGAGA
GATCCTAAAAATATTAAATTGAAACGATGTAGAGTCCTTGAAGAGAATTCGATCAACATG
CAGTACGAATATTAACATATGCGAAATTGCTTGATTTCTAAAGTGATCTTTAACTTTTAT
AAAGTTAACGAATAATGGTCTTCATAATTTTATTAAATAAACTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7178#0      GCTTGACAATCTTCTATGTTATTCATTTGCTTGCAATATTTTCTGACAGTACTGAATGGG 60
consensus_7178#1      ------------------------------------------------------------
                                                                                  

consensus_7178#0      TTATCACATGTAACAAAACAACTTGTTGTGACGAAGACAAAAACTCAAAAATATGTTGTG 120
consensus_7178#1      ----------------------------------------AAACTCAAAAATATGTTGTG 20
                                                              ********************

consensus_7178#0      TGGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATTTCGATT 180
consensus_7178#1      TCGGTAATGATTGTAAGGATGTCATAAAACCAAGAAGCTCTGGAGCAGATGATCTCAACT 80
                      * *************************************************** ** * *

consensus_7178#0      TATACAGGAGAAAGATTGGGATGGCTAATAAACTAGGAGAGATACTAAAAAAACTAAAT- 239
consensus_7178#1      TATTCCTGAGAAAGCGTGGAATGGCTTATAAACTAGGAGAGATCCTAAAAATATTAAATT 140
                      *** *  *******  *** ****** **************** ******* * ***** 

consensus_7178#0      ------------AGTCCTTGAAGATAATTTGGTCAACATGCAGTACGATTATTAACATAT 287
consensus_7178#1      GAAACGATGTAGAGTCCTTGAAGAGAATTCGATCAACATGCAGTACGAATATTAACATAT 200
                                  ************ **** * **************** ***********

consensus_7178#0      GCGAAATAGCTTGATTTCTGAAGTGATCTTCAACTTTCCTAATGTTAGAGAATAATGGTG 347
consensus_7178#1      GCGAAATTGCTTGATTTCTAAAGTGATCTTTAACTTTTATAAAGTTAACGAATAATGGTC 260
                      ******* *********** ********** ******  *** ****  ********** 

consensus_7178#0      TTTGTAATTGGTTCGTGTTTTAATAATAAACCAAACTTG 386
consensus_7178#1      TTCATAATTT-------TATTA--AATAAACTTAAT--- 287
                      **  *****        * ***  *******  **