cluster # 7202

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Schistosoma mansoni
cluster # 7202 cluster # 7202 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7202#0 length = 304 sequences # 1

consensus_7202#1 length = 250 sequences # 4

consensusID : consensus_7202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATGCATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCCTTGCTCACATCATAGCTGAATGATGTGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCAAAAAGCATAATAAACGCGGGAACAAAAA]

[+] EMBL BE519452             [GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATGCATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCCTTGCTCACATCATAGCTGAATGATGTGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCAAAAAGCATAATAAACGCGGGAACAAAAA]




>consensus_7202#0
GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATG
CATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCC
TTGCTCACATCATAGCTGAATGATGTGAGCAAGAATCATACTAGTCATAATCAAAATCGA
AAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGC
GTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCAAAAAGCATAATAAACGCGGGAACA
AAAA

consensusID : consensus_7202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 250
fasta sequence

                              [AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTAAAGATGGAATAAATT]

[+] EMBL AI067591             [AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTA                        ]
[+] EMBL SM948                [     TGTGATNTGGNGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGNGATACCCATCACTTAAAGGCG TGGNCCTAAATTCCTAAGGAATATGAGGTTTGNCAAAAAGCATAATAAACGCGGGAACAAAAACGTCCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTAAAGATGGAATAAATT]
[-] EMBL CD139355             [                        AGAATCATACTAGTCATAATCAAAATCGAAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTA               ]
[+] EMBL CD193375             [                                                                TAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTA                                  ]




>consensus_7202#1
AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCGAAAGCAGC
ACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGGCGTTGACC
CTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAACAAAAACG
TTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGTGTAAAGAT
GGAATAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7202#0      GGATCGCTTCAACAGTGTAAAAGGTTTGAAATAGGAACAATAACAGGGCGGACTTGCATG 60
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      CATATAGCAACAATCTCTTGCNNCACACAAACAATATTGTCATGCACTGTCCCATCGCCC 120
consensus_7202#1      ------------------------------------------------------------
                                                                                  

consensus_7202#0      TTGCTCACATCATAGCTGAATGATGT-GAGCAAGAATCATACTAGTCATAATCAAAATCG 179
consensus_7202#1      --------AGTAGTGTGACATGGCGAAGAGCAAGAATCATACTAGTCATAATCAAAATCG 52
                              *  *  *    ***  *  *********************************

consensus_7202#0      AAAGCAGCACCGTAACGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGG 239
consensus_7202#1      AAAGCAGCACCGTAATGGGATCCATAAACCAAAGAAACAGCGATACCCATCACTTAAAGG 112
                      *************** ********************************************

consensus_7202#0      CGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGC-AAAAAGCATAATAAACGCGGGAA 298
consensus_7202#1      CGTTGACCCTAAATTCCTAAGGAATATGAGGTTTGCCAAAAAGCATAATAAACGCGGGAA 172
                      ************************************ ***********************

consensus_7202#0      CAAAAA------------------------------------------------------ 304
consensus_7202#1      CAAAAACGTTCAACCTGAAGTCACTCCTGCAGTACCAGAATGTAAATGATCTTAAGTGGT 232
                      ******                                                      

consensus_7202#0      ------------------
consensus_7202#1      GTAAAGATGGAATAAATT 250