cluster # 7212

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Schistosoma mansoni
cluster # 7212 cluster # 7212 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7212#0 length = 509 sequences # 3

consensus_7212#1 length = 421 sequences # 1
consensus_7212#2 length = 406 sequences # 1

consensusID : consensus_7212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 509
fasta sequence

                              [GGAAATAGATGTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGCTTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTCATTCATACCTTAGTCA]

[+] EMBL CD162886             [GGAAATAGATGTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGCTTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTCATTCATACCTTAGTCA]
[+] EMBL CD111356             [          GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATT                                                                                                                                          ]
[+] EMBL CD111241             [          GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATT                                                                                                                                          ]




>consensus_7212#0
GGAAATAGATGTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGT
GAAAAACCTCACCATTAATTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTT
CCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACT
CATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGG
GTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAAC
TGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGT
CAAATATTATTATCTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTG
GTTTTGACATGGCTTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGT
CGTCTGCCCTCTCATTCATACCTTAGTCA

consensusID : consensus_7212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATCTGAAATAAAAATGTATACTTTATCCAACAGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTTCA]

[+] EMBL CD111360             [GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTCACCATTAATCTGAAATAAAAATGTATACTTTATCCAACAGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTTCA]




>consensus_7212#1
GTAGATATTATGATCTTCAGCATGCAAAGGTTTTTCTACGAATGGTTTGTGAAAAACCTC
ACCATTAATCTGAAATAAAAATGTATACTTTATCCAACAGGTACTTCAATTGAATCGTCA
AGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCTCGGAACT
GGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGG
GACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTG
AGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATCACAGATGGGCCATGACTCTATT
GGTGAATCTAATATCATTTTCTCGTCAAATATTATTATCTTAATGTGCTGAAACTTGTTC
A

consensusID : consensus_7212#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGAACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAAAATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATGACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA]

[-] EMBL CD197902             [AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGAACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAAAATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATGACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATCAACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCTTCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTTCGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA]




>consensus_7212#2
AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGA
ACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAA
AATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATG
ACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC
AACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT
TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT
CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7212#0      ------------------------------------------------------------
consensus_7212#1      ------------------------------------------------------------
consensus_7212#2      AAGTGCTGAGTTTCTCTAAACGTCTAATCTCTCTACTAACTGCAAGTCTTATATTCCAGA 60
                                                                                  

consensus_7212#0      --GGAAATAGATGTAGATATTATGATCTTCAG------CATGCAAAG--GTTTTTCTACG 50
consensus_7212#1      ------------GTAGATATTATGATCTTCAG------CATGCAAAG--GTTTTTCTACG 40
consensus_7212#2      ACAAATATTCATACCCATACTACAATATTAAGGGGTACTATTCAATACTGTTTACCTGAA 120
                                      *** **  ** ** **       ** ***    ****  **   

consensus_7212#0      AATGGTTTGTGAAAAACCTCACC--ATTAAT----------------------------- 79
consensus_7212#1      AATGGTTTGTGAAAAACCTCACC--ATTAATCTGAAATAAAAATGTATACTTTATCCAAC 98
consensus_7212#2      AATAAGACGTAGTGGAAATTAGTTAGCTAATAAAATCCACTTTCATCATTAGGCAAAATG 180
                      ***     **     *  * *      ****                             

consensus_7212#0      ------TTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 133
consensus_7212#1      AGGTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 158
consensus_7212#2      ACTTACTTCAATTGAATCGTCAAGCTCAACAACTTTCACTGGGTTTTCCGATGTCCTATC 240
                            ******************************************************

consensus_7212#0      AACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 193
consensus_7212#1      AACAAATGCATATCTCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 218
consensus_7212#2      AACAAATGCATATCCCGGAACTGGAACACCTTCTCTCGTCAAGCACTCATAAACCCTTCT 300
                      ************** *********************************************

consensus_7212#0      TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 253
consensus_7212#1      TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 278
consensus_7212#2      TCTGTCCATTAAAATGTATTGGGACTCAAGATCATTGACAAGGTAGGGTTTCCGAAGCTT 360
                      ************************************************************

consensus_7212#0      CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATC 313
consensus_7212#1      CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAACTGACCAGTGCATC 338
consensus_7212#2      CGAATAAGCAATAGCTTTTTTGAGGGGAAATCCTTCGGAATAAAAA-------------- 406
                      **********************************************              

consensus_7212#0      ACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTAT 373
consensus_7212#1      ACAGATGGGCCATGACTCTATTGGTGAATCTAATATCATTTTCTCGTCAAATATTATTAT 398
consensus_7212#2      ------------------------------------------------------------
                                                                                  

consensus_7212#0      CTTAATGTGCTGAAACTTGTCCATTCTTCGCAAAATTTCCTTCATTGGTTTTGACATGGC 433
consensus_7212#1      CTTAATGTGCTGAAACTTGTTCA------------------------------------- 421
consensus_7212#2      ------------------------------------------------------------
                                                                                  

consensus_7212#0      TTTCTTTGCCATTGCACAAACTCCTATCGTGACAACTACATCACTGTCGTCTGCCCTCTC 493
consensus_7212#1      ------------------------------------------------------------
consensus_7212#2      ------------------------------------------------------------
                                                                                  

consensus_7212#0      ATTCATACCTTAGTCA 509
consensus_7212#1      ----------------
consensus_7212#2      ----------------