cluster # 7230

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7230 cluster # 7230 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7230#0 length = 356 sequences # 4

consensus_7230#1 length = 301 sequences # 1

consensusID : consensus_7230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 356
fasta sequence

                              [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC]

[+] EMBL CD111255             [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACTTGAGAGTCATAAGTCG ]
[+] EMBL CD111388             [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCG ]
[+] EMBL CD111484             [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAGGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCG ]
[-] EMBL CD110974             [ TGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATCTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC]




>consensus_7230#0
ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATA
TTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTT
TAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAG
ACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAA
ACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATAC
TTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC

consensusID : consensus_7230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [GCTNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG]

[-] EMBL CD095159             [GCTNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG]




>consensus_7230#1
GCTNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAG
GTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCG
TAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGA
AAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAA
TACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCT
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7230#0      ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATA 60
consensus_7230#1      ----------------------------------------------------------GC 2
                                                                                  

consensus_7230#0      TTTACGCTTGACCTGTGAA-TATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGT 119
consensus_7230#1      TNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGT 62
                      *  *       **** * * ****************************************

consensus_7230#0      TTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTA 179
consensus_7230#1      TTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTA 122
                      ************************************************************

consensus_7230#0      GACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAA 239
consensus_7230#1      GACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAA 182
                      ************************************************************

consensus_7230#0      AACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATA 299
consensus_7230#1      AACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATA 242
                      ************************************************************

consensus_7230#0      CTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC-- 356
consensus_7230#1      CTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG 301
                      *********************************************************