cluster # 7244

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Schistosoma mansoni
cluster # 7244 cluster # 7244 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7244#0 length = 724 sequences # 4

consensus_7244#1 length = 301 sequences # 1

consensusID : consensus_7244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 724
fasta sequence

                              [GTTTATTGATAAGTTAGAAACCCTTA-ATC-AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAGGGTGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTTTCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCCAAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGAATATT]

[-] EMBL CD189812             [GTTTATTGATAAGTTAGAAACCCTTA ATC AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD158375             [ TTTATTGATAAGTTAGAAACCCTTA ATC AAGCAACAATTCCAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAG                                                                                                                                                                                           ]
[-] EMBL CD185878             [                     ctTTAGATCTATTCATCAATTACAGAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD155362             [                                                                                                                                                                                                                                             TATGGTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATCGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAGCATATTTGGAACATCTCAAAACTAGACTCAGTACTAAGTCGGGTTTTTGAAGAAGAGGGTGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTTTCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCCAAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGAATATT]




>consensus_7244#0
GTTTATTGATAAGTTAGAAACCCTTAATCAAGCAACAATTCCAGAAATACCTGTGTACAA
ACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGG
TGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAA
AGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGG
TGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGAT
ATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTA
TACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGATC
GGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCAG
CATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAGGGT
GTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTTT
CCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCCA
AAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGAA
TATT

consensusID : consensus_7244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [GTTTATTGATAAGTTAGAAAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT]

[-] EMBL CD183504             [GTTTATTGATAAGTTAGAAAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGATATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTAT]




>consensus_7244#1
GTTTATTGATAAGTTAGAAAAATACCTGTGTACAAACCTACGGTTGCAGAATTCGAGGAC
TTCAGTAAATGTATTTCCATGATAGAGTCCCTCGGTGCTCATCATGTAGGACTTTGTAAA
GTAATACCACCGTCAAATTGGGTTGGGCGTCGCAAAGGTTATGATGATATTGATGAGCGT
TTAGTGGAAAAACCTATTTGTCAAAGCACATATGGTGGACGTGGTATATATTTTCAGGAT
ATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGTA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7244#0      GTTTATTGATAAGTTAGAAACCCTTAATCAAGCAACAA-TTCCAGAAATACCTGTGTACA 59
consensus_7244#1      --------------------------GTTTATTGATAAGTTAGAAAAATACCTGTGTACA 34
                                                 *  *   * ** **  * ***************

consensus_7244#0      AACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCG 119
consensus_7244#1      AACCTACGGTTGCAGAATTCGAGGACTTCAGTAAATGTATTTCCATGATAGAGTCCCTCG 94
                      ************************************************************

consensus_7244#0      GTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCA 179
consensus_7244#1      GTGCTCATCATGTAGGACTTTGTAAAGTAATACCACCGTCAAATTGGGTTGGGCGTCGCA 154
                      ************************************************************

consensus_7244#0      AAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATG 239
consensus_7244#1      AAGGTTATGATGATATTGATGAGCGTTTAGTGGAAAAACCTATTTGTCAAAGCACATATG 214
                      ************************************************************

consensus_7244#0      GTGGACGTGGTATATATTTTCAGGTCTGTCTTATTACTTTCCTCAACAATGAGTGTAGGA 299
consensus_7244#1      GTGGACGTGGTATATATTTTCAGG-----------------------------------A 239
                      ************************                                   *

consensus_7244#0      TATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGT 359
consensus_7244#1      TATTTCGCCCAGAAAAAGTCTCAAATTCAGTGACTTTAAAAATATTGCGTTATCAAATGT 299
                      ************************************************************

consensus_7244#0      ATACTGCACCCCCAAGTACAGAGACTACGATCACCTTGAAAGAAAATACTGGTCATCGAT 419
consensus_7244#1      AT---------------------------------------------------------- 301
                      **                                                          

consensus_7244#0      CGGCACTAGTCGTCCACTGTATGGGGCTAACGTCAATGGAACTTTGATGGATAGTGACCA 479
consensus_7244#1      ------------------------------------------------------------
                                                                                  

consensus_7244#0      GCATATTTGGAACATCTCANAACTAGACTCAGTACTAAGTCGGGTTTTCGAAGAAGAGGG 539
consensus_7244#1      ------------------------------------------------------------
                                                                                  

consensus_7244#0      TGTACAGATACCAGGTGTGAATACTCCATATTTGTATTATGGAATGTGGCGATCTACGTT 599
consensus_7244#1      ------------------------------------------------------------
                                                                                  

consensus_7244#0      TCCGTGGCATGTTGAAGATGTAGATTTGTACTCTATAAACTACCTGCATTACGGTTTTCC 659
consensus_7244#1      ------------------------------------------------------------
                                                                                  

consensus_7244#0      AAAGTGCTGGTACGTCATACCTCCAGCTTTTGCGCGTAAATTTGAATCCTTTGTTTCCGA 719
consensus_7244#1      ------------------------------------------------------------
                                                                                  

consensus_7244#0      ATATT 724
consensus_7244#1      -----