cluster # 7268

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Schistosoma mansoni
cluster # 7268 cluster # 7268 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7268#0 length = 713 sequences # 4

consensus_7268#1 length = 654 sequences # 1

consensusID : consensus_7268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 713
fasta sequence

                              [CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTACAGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACACA]

[-] EMBL CD138205             [CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTACAGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGT                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD193046             [                                                                                                                                              TGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACACA]
[-] EMBL CD077914             [                                                                                                                                                                                                                                                                                                                                                  AACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATCTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTATCCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATG                                     ]
[+] EMBL CD159120             [                                                                                                                                                                                                                                                                                                                                                    CAACTCCAGCACCTGTGTGCTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCGACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCATGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCTGGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACCTTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACAC ]




>consensus_7268#0
CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTAC
AGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGG
GTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTT
TCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACA
CGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAAC
TGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGT
TTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGA
CCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCG
ACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCA
TGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCT
GGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACC
TTTAATCTGAGGGATGAACGGAAAGCTAGGCCCAAGTCAAATCTGCCTACACA

consensusID : consensus_7268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCGACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAATAAGGCTTGTCTTGGGGCATGCTCCAATAAAGTCACATATTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGCGGCTGGTCCTGAGCTGACTTCCAAGTTGCAACCCCAAAACTGGCTAATACCTTCCTCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTAA]

[+] EMBL AI394760             [TTTTTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTTTCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCGACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAATAAGGCTTGTCTTGGGGCATGCTCCAATAAAGTCACATATTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGCGGCTGGTCCTGAGCTGACTTCCAAGTTGCAACCCCAAAACTGGCTAATACCTTCCTCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTAA]




>consensus_7268#1
TTTTTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGAC
GGGGTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGC
CTTTCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCA
ACACGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAA
AACTGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTG
TGTTTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCC
CGACCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANA
GCGACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAATAAGGCTTGTCTTGGGGC
ATGCTCCAATAAAGTCACATATTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGCGG
CTGGTCCTGAGCTGACTTCCAAGTTGCAACCCCAAAACTGGCTAATACCTTCCTCCGGTC
CAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7268#0      CTGTGAAAGCCAAGTAGAACTCACTCTTCTACATGTCAACATATAGATCTCAGATTGTAC 60
consensus_7268#1      ---------------------------------------------------------TTT 3
                                                                               *  

consensus_7268#0      AGTTTCAGATAAGTAAAACTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGG 120
consensus_7268#1      TTTTTTTTTTTTTTTTTTTTTTATACAATAAAATGTTACAGAACTTTAGGTATCGACGGG 63
                        ***    *   *     *****************************************

consensus_7268#0      GTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTT 180
consensus_7268#1      GTAATTTACACAGTGTTCGTTGTGTTCGCGCGGATTATCTTGATAAGCTCACGAGGCCTT 123
                      ************************************************************

consensus_7268#0      TCTGCTTGATCAACATCGACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACA 240
consensus_7268#1      TCTGCTTGATCAACATCTACCATACCGAGGCGCTGGACAACTTTCATGCCGGAAGCAACA 183
                      ***************** ******************************************

consensus_7268#0      CGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAAC 300
consensus_7268#1      CGTCCAAAAATAGTATGTTTACCATCTAACCACTGTGTAGGAGCCAAAGTTATAAAAAAC 243
                      ************************************************************

consensus_7268#0      TGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGT 360
consensus_7268#1      TGACTGCCATTTGTATTTGGACCCGCGTTTGCCATTGAAACAACTCCAGCACCTGTGTGT 303
                      ************************************************************

consensus_7268#0      TTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGA 420
consensus_7268#1      TTTAGGTCAGGGTGAATTTCATCCGCGAAATAAGAGCCATATATTGATGCTCCACCCCGA 363
                      ************************************************************

consensus_7268#0      CCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAAAAGCG 480
consensus_7268#1      CCAGTACCTGTTGGGTCTCCACCTTGTATCATGAAATCTCGGATAACACGATGAANAGCG 423
                      ******************************************************* ****

consensus_7268#0      ACATTATTATAGTAACCACGCCTTGCTAACTCAGCGAAATTAAGGCATGTCTTTGGGGCA 540
consensus_7268#1      ACATTTTTATAGTAACCACGCCTTGCTAACTCAACGAAAT-AAGGCTTGTCTT-GGGGCA 481
                      ***** *************************** ****** ***** ****** ******

consensus_7268#0      TGCTTCCAATAAAGTTCAATAGTTATAGTGCCTTGATTAGTGTCAAGAACAACAAAAGCT 600
consensus_7268#1      TGCT-CCAATAAAGTCACATA-TTAAAATGGCCTGATTAATGTCAAGAACCACAAAAGC- 538
                      **** **********   *** *** * ** * ****** ********** ******** 

consensus_7268#0      GGCTGGTCTTGAGCTGACATTCACAGCTGCAACACCAAAATCTGCTACTACCTTTCGACC 660
consensus_7268#1      GGCTGGTCCTGAGCTGACTTCCA-AGTTGCAACCCCAAAACTGGCTAATACCTT----CC 593
                      ******** ********* * ** ** ****** ******   **** ******    **

consensus_7268#0      TTTAATCTGAGGGATGAACGGAAAGCT---AGGCCCAAGTCAAATCTGCCTACACA---- 713
consensus_7268#1      TCCGGTCCAAATTCTGGGCCCCAAGCNCCAATTCCTCAAATTAATCTCATTAAATTCCTA 653
                      *    **  *    **  *   ****    *  **  *    *****   ** *      

consensus_7268#0      -
consensus_7268#1      A 654