cluster # 7273

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Schistosoma mansoni
cluster # 7273 cluster # 7273 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7273#0 length = 640 sequences # 3

consensus_7273#1 length = 444 sequences # 1
consensus_7273#2 length = 135 sequences # 1

consensusID : consensus_7273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 640
fasta sequence

                              [GTCCTTGGATATCATGTCAAGCCATATTCGATTAACTTTTCTTTTTAACAATTGACTGACAGCTTCTCTAGATTTTCGACTTGTAATGTATCGAATATACAATTGTCCCACTGTTGGATTACCCTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGGGTTATCAGAAATATCGGTACCGTTCGTCGGTAATAAAGGGGTCTTTACAGCTTGTGTTACAGAATCTTGAGTACGAGTTATGTTAAGCTGTGCTCGCTTTCCGTGTAATTGAGTTTCAATTTGTTGCATTTGACCTTGAAGTTCAACAAGTACGTCCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATTGATGTTGAATACTTTGATGTTTTTTCTGCAATTCAATCATGGAGTTTATGATCGAAATTTGACGGNGCGACCTTTTTGTTGAGTTTTGGTTTAAAGATATTGGTCCAGTCGATGTACGGCTATTTTTGATGGGACATANACTAGTAATAGTTGGCAGGCTAGTGCTTG-ATGTGGA-TAGCGGACGATGAAGTTT-AATGTTGG-ATTANCGCTTGAT-AGGGAAGAGGTG]

[+] EMBL CD153179             [GTCCTTGGATATCATGTCAAGCCATATTCGATTAACTTTTCTTTTTAACAATTGACTGACAGCTTCTCTAGATTTTCGACTTGTAATGTATCGAATATACAATTGTCCCACTGTTGGATTACCCTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGGGTTATCAGAAATATCGGTACCGTTCGTCGGTAATAAAGGGGTCTTTACAGCTTGTGTTACAGAATCTTGAGTACGAGTTATGTTAAGCTGTGCTCGCTTTCCGTGTAATTGAGTTTCAATTTGTTGCATTTGACCTTGAAGTTCAACAAGTACGTCCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATTGATGTTGAATACTTTGATGTTTTTTCTGCAATTCAATCATGGAGTTTATGATCGAAATTTGACGGNGCGACCTTTTTGTTGAGTTTTGGTTT NAGATATTGGTCCAGTCGATGTACGGCTATTTTTGATGGGACATANACTAGTAATAGTTGGCAGGCTAGTGCTTG ATGTGGA TAGCGGACGATGAAGTTT AATGTTGG ATTANCGCTTGAT AGGGAAGAGGTG]
[+] EMBL CD153006             [GTCCTTGGATATCATGTCAAGCCATATTCGATTAACTTTTCTTTTTAACAATTGACTGACAGCTTCTCTAGATTTTCGACTTGTAATGTATCGAATATACAATTGTCCCACTGTTGGATTACCCTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGAGTTATCAGAAATATCGGTACCGTTCGTCGGTAATAAAGGGGTCTTTACAGCTTGTGTTACAGAATCTTGAGTACGAGTTATGTTAAGCTGTGCTCGCTTTCCGTGTAATTGAGTTTCAATTTGTTGCATTTGACCTTGAAGTTCAACAAGTACGTCCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATTGATGTTGAATACTTTGATGTTTTTTCTGCAATTCAATCATGGAGTTTATGATCGAAATTTGACGGNGCGACCTTTTTGTTGAGTTTTGGTTTAAAGATATTGGT                                                                                                                               ]
[+] EMBL CD153214             [                                                                                                                                                                                                                                                                                                                                                    TTGAAGTTCAACAAGTACGTCCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATTGATGTTGAATACTTCGATGTTTTTTCTGCAATTCAATCATGGAGTTTATGATCGAAATTTGACGGGGCGACCTTTTTGTTGAGTTTTGGTTTAAAGATATTGGTCCAGTCGATGTACGGCTATTTTTGATGGGACATAAACTAGTAATAGTTGGCAGGCTAGTGCTTGAATGTGGATTAGCGGACGATGAAGTTTGAATGTTGGAATTAACGCTTGATAAGGAAAGAGGTG]




>consensus_7273#0
GTCCTTGGATATCATGTCAAGCCATATTCGATTAACTTTTCTTTTTAACAATTGACTGAC
AGCTTCTCTAGATTTTCGACTTGTAATGTATCGAATATACAATTGTCCCACTGTTGGATT
ACCCTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAA
TCCATGTTCCAATAGCAGGAAACGGGTTATCAGAAATATCGGTACCGTTCGTCGGTAATA
AAGGGGTCTTTACAGCTTGTGTTACAGAATCTTGAGTACGAGTTATGTTAAGCTGTGCTC
GCTTTCCGTGTAATTGAGTTTCAATTTGTTGCATTTGACCTTGAAGTTCAACAAGTACGT
CCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATTGATGTT
GAATACTTTGATGTTTTTTCTGCAATTCAATCATGGAGTTTATGATCGAAATTTGACGGN
GCGACCTTTTTGTTGAGTTTTGGTTTAAAGATATTGGTCCAGTCGATGTACGGCTATTTT
TGATGGGACATANACTAGTAATAGTTGGCAGGCTAGTGCTTGATGTGGATAGCGGACGAT
GAAGTTTAATGTTGGATTANCGCTTGATAGGGAAGAGGTG

consensusID : consensus_7273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [AGTTGCTCATTTTAGAAACTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGAGTTATCAGAAATATCGGTACCTAAAAAGCAAACAAAACACAAGACAAAAATTTGTTTTTAATCTAGTACGTAAACTCGAAATGCTGATAGACTGAAAAGTGATACCTACAATTCGGTTGATGCGGTAATGAACCTTCATCTACCGAGGTGTATAGGATGTGTCATGTATGCCCGATCACCGCCTACCTCAACACGCGATGCTAGTCAGTGTAAGAATAGGTTGAGAGAAAGCCACGGGCGGCCGAACTAGAACGTGATATCAGTCCATGAAGTCACTGACAGTTGGACTAAGTCGTGTAGAAAGGTACAAATCACCTGGTTGTTGTCCGTGATAATCGTAACCA]

[+] EMBL CD089853             [AGTTGCTCATTTTAGAAACTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAATGTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGAGTTATCAGAAATATCGGTACCTAAAAAGCAAACAAAACACAAGACAAAAATTTGTTTTTAATCTAGTACGTAAACTCGAAATGCTGATAGACTGAAAAGTGATACCTACAATTCGGTTGATGCGGTAATGAACCTTCATCTACCGAGGTGTATAGGATGTGTCATGTATGCCCGATCACCGCCTACCTCAACACGCGATGCTAGTCAGTGTAAGAATAGGTTGAGAGAAAGCCACGGGCGGCCGAACTAGAACGTGATATCAGTCCATGAAGTCACTGACAGTTGGACTAAGTCGTGTAGAAAGGTACAAATCACCTGGTTGTTGTCCGTGATAATCGTAACCA]




>consensus_7273#1
AGTTGCTCATTTTAGAAACTGATCCATCCATGATGTTTTTATCGAAATTTTCACCACAAT
GTGGTGAAGGAGCAATCCATGTTCCAATAGCAGGAAACGAGTTATCAGAAATATCGGTAC
CTAAAAAGCAAACAAAACACAAGACAAAAATTTGTTTTTAATCTAGTACGTAAACTCGAA
ATGCTGATAGACTGAAAAGTGATACCTACAATTCGGTTGATGCGGTAATGAACCTTCATC
TACCGAGGTGTATAGGATGTGTCATGTATGCCCGATCACCGCCTACCTCAACACGCGATG
CTAGTCAGTGTAAGAATAGGTTGAGAGAAAGCCACGGGCGGCCGAACTAGAACGTGATAT
CAGTCCATGAAGTCACTGACAGTTGGACTAAGTCGTGTAGAAAGGTACAAATCACCTGGT
TGTTGTCCGTGATAATCGTAACCA

consensusID : consensus_7273#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 135
fasta sequence

                              [TTGAATGTGGATTAGCGGACGATGAAGTTTGAATGTTGGAATTAACGCTTGATAATGAAAGAGGTGGAGGCTGTCCCAAAAGCGAACCACCACAAGTTCCCACTGTGGCACTTCCGTTCGTCTGTACACCTAACG]

[+] EMBL CD087737             [TTGAATGTGGATTAGCGGACGATGAAGTTTGAATGTTGGAATTAACGCTTGATAATGAAAGAGGTGGAGGCTGTCCCAAAAGCGAACCACCACAAGTTCCCACTGTGGCACTTCCGTTCGTCTGTACACCTAACG]




>consensus_7273#2
TTGAATGTGGATTAGCGGACGATGAAGTTTGAATGTTGGAATTAACGCTTGATAATGAAA
GAGGTGGAGGCTGTCCCAAAAGCGAACCACCACAAGTTCCCACTGTGGCACTTCCGTTCG
TCTGTACACCTAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7273#0      GTCCTTGGATATCATGTCAAGCCATATTCGATTAACTTTTCTTTTTAACAATTGACTGAC 60
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      ------------------------------------------------------------
                                                                                  

consensus_7273#0      AGCTTCTCTAGATTTTCGACTTGTAATGTATCGAATATACAATTGTCCCACTGTTGGATT 120
consensus_7273#2      -----------------------------------------------------TTGAATG 7
consensus_7273#1      -----------------------------------------AGTTGCTCATTTTAGAA-- 17
                                                                           * * *  

consensus_7273#0      ACCCTGATCCATCCATGATGTTTT--TATCGAAATTTTCACCACAATGTGGTGAAGGAGC 178
consensus_7273#2      TGGATTAGCGGACGATGAAGTTTGAATGTTGGAATTAACGCTTGATAATGAAAGAGGTGG 67
consensus_7273#1      --ACTGATCCATCCATGATGTTTT--TATCGAAATTTTCACCACAATGTGGTGAAGGAGC 73
                          * * *   * **** ****   * * * ****  * *   *   **    *** * 

consensus_7273#0      AATCCATGTTCCAATAGCAGGAAAC---GGGTTATCAGAAATATCGGTACCGTTCGTCGG 235
consensus_7273#2      AGGC--TGTCCCAAAAGCGAACCACCACAAGTTCCCACTG-TGGCACTTCCGTTCGTCTG 124
consensus_7273#1      AATCCATGTTCCAATAGCAGGAAAC---GAGTTATCAGAAATATCGGTACC--TAAAAAG 128
                      *  *  *** **** ***     **     ***  **    *  *  * **  *     *

consensus_7273#0      TA-ATAAAGGGGTCTTTACAGCTTGTGTTACAGAATCTTGAGTACGAGTTATGTTAAGCT 294
consensus_7273#2      TACACCTAACG------------------------------------------------- 135
consensus_7273#1      CAAACAAAACACAAGACAAAAATTTGTTTTTAATCTAGTACGTAAACTCGAAATGCTGAT 188
                       * *   *                                                    

consensus_7273#0      GTGCTCGCTTTCCGTGTAATTGAGTTTCAATTTGTTGCATTTGACCTTGAAGTTCAACAA 354
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      AGACTGAAAAGTGATACCTACAATTCGGTTGATGCGGTAATGAACCTTCA--TCTACCGA 246
                                                                                  

consensus_7273#0      GTACGTCCGCATACTGAGGTTGTGAACGAAGGGCAGGGTTATTGTGATACATATTTAATT 414
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      GGTGTATAGGATGTGTCATGTATGCCCGATCACCGCCTACCTCAACACGCGATGCTAGTC 306
                                                                                  

consensus_7273#0      GATGTT-GAATACTTTGATGTTTTTTC-TGCAATTCAATCATGGAGTTTATGATCGAAAT 472
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      AGTGTAAGAATAGGTTGAGAGAAAGCCACGGGCGGCCGAACTAGAACGTGATATCAGTCC 366
                                                                                  

consensus_7273#0      TTGACGGNGCGACCTTTTTGTTGAGTTTTGGTTTAAAGATATTGGTCCAGTCGATGTACG 532
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      ATGAAGTCACTGACAGTTGGACTAAGTCGTGTAGAAAGGTACAAATCACCTGGTTGT-TG 425
                                                                                  

consensus_7273#0      GCTATTTTTGATGGGACATANACTAGTAATAGTTGGCAGGCTAGTGCTTGATGTGGATAG 592
consensus_7273#2      ------------------------------------------------------------
consensus_7273#1      TCCGTGATAATCGTAACCA----------------------------------------- 444
                                                                                  

consensus_7273#0      CGGACGATGAAGTTTAATGTTGGATTANCGCTTGATAGGGAAGAGGTG 640
consensus_7273#2      ------------------------------------------------
consensus_7273#1      ------------------------------------------------