cluster # 7327

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7327 cluster # 7327 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7327#0 length = 912 sequences # 4

consensus_7327#1 length = 270 sequences # 1

consensusID : consensus_7327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 912
fasta sequence

                              [CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACAAGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTATTCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCCAAACTCATTGAACAATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAATCTGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACTATGAGCTATGAGGATTCTTTATCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTG-TTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACCACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCATCCATTCACTAATACA]

[+] EMBL CD077701             [CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACAAGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTATTCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCCAAACTCATTGAACAATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD202041             [                                                                                                                                                                           ATTGATCTGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGCTTATATATTCAATTAATAATCTGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACTATGAGCTATGAGGATTCTTTATCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTG TTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACCACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCATCCATTCACTAATACA]
[+] EMBL CD078172             [                                                                                                                                                                                                                                                                  ATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATTACAATGTGGTTTCATCTTGGCAAAAAATAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD201616             [                                                                                                                                                                                                                                                                                                                                                                                           TCATTCCCATTATACATATATTATTATTTTCATTGCCGTTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGATTAAATTGTATTTAATTTATTCATTTCTGTTTTATGCTACTGTCTTCTTTCACGTTTGTTTCTCTGTTTTCCCTTCTTCTGTATCGTTTGATTATTTAGTTTAACTTATACCTACTTGCCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAATATTTTGTTTT GTGTGTTTGCCATATTATGTGACATGCAACCATCATCATTGTTAC                                                                            ]




>consensus_7327#0
CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACA
AGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTAT
TCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCCAAACTCATTGAACAATTGATCTG
AATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAATCTG
ATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATATT
ACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACTAT
GAGCTATGAGGATTCTTTATCATTCCCATTATACATATATTATTATTTTCATTGCCGTTG
TTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTAGTC
CTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCTTGA
TTAAATTGTATTTAATTTATTCATTTCTGTTTATGCTACTGTCTTCTTTCACGTTTGTTT
CTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTGCCT
ATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGATTG
TTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAGAAT
ATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACCACC
CTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCATCCA
TTCACTAATACA

consensusID : consensus_7327#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GTCTAAACTCCCCTCGACCTTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCTCAAGGCCAAGAATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATTTTTAACAAAAATTAGTGTATTAATTAGGACTGTACATTCGATAATTTAAAATCTACCTTTAATTGTGTATTCGGTTCCAATCGAAGTATTACACCAACTTGTTGACTACTAGTTACAACAATTCCAGCGCCAACAACATT]

[+] EMBL CD117799             [GTCTAAACTCCCCTCGACCTTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCTCAAGGCCAAGAATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATTTTTAACAAAAATTAGTGTATTAATTAGGACTGTACATTCGATAATTTAAAATCTACCTTTAATTGTGTATTCGGTTCCAATCGAAGTATTACACCAACTTGTTGACTACTAGTTACAACAATTCCAGCGCCAACAACATT]




>consensus_7327#1
GTCTAAACTCCCCTCGACCTTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAA
AATTATAGTGCGGCTCAAGGCCAAGAATATGTCTATGCGTATACATCTGGCAAATAAGTG
AATAATTATTTTTAACAAAAATTAGTGTATTAATTAGGACTGTACATTCGATAATTTAAA
ATCTACCTTTAATTGTGTATTCGGTTCCAATCGAAGTATTACACCAACTTGTTGACTACT
AGTTACAACAATTCCAGCGCCAACAACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7327#0      CTCGCAGGCCAGAATTCGGTCCGAGGTTGGCGCTGGAATTGTTGTAACTAGTAGTCAACA 60
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      AGTTGGTGTACTACTTCGATTGGAACCGAATACACAATTAAAGATGTATTGCCTAACTAT 120
consensus_7327#1      -----------------------------------------GTCTAAACTCCCCTCGACC 19
                                                                  *  * * **       

consensus_7327#0      TCGCAGTACAAGAGAAATCGTCTCGTCTCATTTAGCC--AAACTCATTGAACAATTGATC 178
consensus_7327#1      TTGTTTAACTTGTACAACCGACTAGTATCATGAGGCCTTAAAATTATAGTGCGGCT---C 76
                      * *    **  *   ** ** ** ** ****   ***  *** * ** *  *   *   *

consensus_7327#0      TGAATTGAATTGTTTTGTCTTCATTGTCACTATTATTGGTTATATATTCAATTAATAATC 238
consensus_7327#1      AAGGCCAAG--AATATGTCTATGCGTATACATCTGGCAAATAAGTGAATAATTATT--TT 132
                             *     * *****        **   *      **  *    ***** *  * 

consensus_7327#0      TGATCATTGTTAATGTGACCATTATGGATCAATCCAATGGGATATTCTTTATAATTTATA 298
consensus_7327#1      TAACAAAAATTAGTGTATTAATTAGGACT--GTACATTCG---ATAATTTAAAATCTACC 187
                      * *  *   *** ***    **** *  *   * ** * *   **  **** *** **  

consensus_7327#0      TTACAATGTGGTTTCATCTTGGCAAAAAATAGATGTATGACAGTAATGATGATGATGACT 358
consensus_7327#1      TTTAATTGTGTATTCGGTTCC------AATCGAAGTATTACACCAAC----TTGTTGACT 237
                      **  * ****  ***   *        *** ** **** ***  **      ** *****

consensus_7327#0      ATGAGCTATGAGGATTCTT-TATCATTCCCATTATACATATATTATTATTTTCATTGCCG 417
consensus_7327#1      ACTAGTTACAACAATTCCAGCGCCAACAACATT--------------------------- 270
                      *  ** **  *  ****      **    ****                           

consensus_7327#0      TTGTTGTTTTCTCTTTGGATAAAACTTTTAAAAACAAAAGGCAAATACGTTTTCCACTTA 477
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      GTCCTCAGAATAAAAATTTCTCTCTCTCTAGTTTTACATGCACATGTGTATGTGTATTCT 537
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      TGATTAAATTGTATTTAATTTATTCATTTCTGTTTATGCTACTGTCTTCTTTCACGTTTG 597
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      TTTCTCTGTTTTCCCTTCTTCTGTATCGNTTGATTATTTAGTTTAACTTATACCTACTTG 657
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      CCTATTTACTTACTTACTTGTAGAGTATTATTTTTTAGTTAGTTTTCATTCTGTTCATGA 717
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      TTGTTTCAATCATTACTTGTTTATTATTTCATAGGATTCTATTGTATTAGTAATAATAAG 777
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      AATATTTTGTTTTGGTGTGGTTGCCATATTATGTGACATGCAACCATCATCATTGNTACC 837
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      ACCCTAATTTCAATGGGGATTACCTTTTTTTGGTACCATCTACTGATCTCCTAATATCAT 897
consensus_7327#1      ------------------------------------------------------------
                                                                                  

consensus_7327#0      CCATTCACTAATACA 912
consensus_7327#1      ---------------